Locus 701

Sequence ID X_DroMel_CAF1
Location 1,925,438 – 1,925,558
Length 120
Max. P 0.592097
window1126

overview

Window 6

Location 1,925,438 – 1,925,558
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 96.17
Mean single sequence MFE -39.58
Consensus MFE -37.82
Energy contribution -38.02
Covariance contribution 0.20
Combinations/Pair 1.06
Mean z-score -1.09
Structure conservation index 0.96
SVM decision value 0.12
SVM RNA-class probability 0.592097
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1925438 120 + 22224390
CUCACCCACUUAGUGCUGAGGAGCUCCUACCGCAGCUGCAGGAGCAGCGCAGGUUUCUGGACGAUGCUAUUACGCGACUGGAGCUCUUGGCCGUCAAGAAGGGCUCGAACAAAAACUAAA
....(((.(((..((.(.(((((((((...(((.(((((....)))))(((.(((....)))..)))......)))...))))))))).).))..)))..)))................. ( -41.60)
>DroSec_CAF1 9408 120 + 1
CUCAUCCACUUAGUGCUGAGGAGCUCCUACCGCAGCUGCAGGAGCAGCGCAGGUUUCUGGACGAUGCUAUUACGCGACUGGAGCUCUUGGCCGUCAAGCAGGGCUCGAACAAAAACUAAA
.........(((((..(((((((((((...(((.(((((....)))))(((.(((....)))..)))......)))...)))))))))((((.(.....).))))....))...))))). ( -41.10)
>DroSim_CAF1 9034 120 + 1
CUCAUCCACUUAGUGCUGAGGAGCUCCUACCGCAGCUGCAGGAGCAGCGCAGGUUUCUGGACGAUGCUAUUACGCGACUGGAGCUCUUGGCCGUCAAGAAGGGCUCGAACAAAAACUAAA
.........(((((..(((((((((((...(((.(((((....)))))(((.(((....)))..)))......)))...)))))))))((((.(.....).))))....))...))))). ( -41.20)
>DroEre_CAF1 9454 120 + 1
CUCAUCCACUUAGCGCUGAGGAGCUCCUGCCGCAACUGCAGGAGCAGCGCAGGUUUCUCGACGAUGCAAUUACGCGACUGGAGCUCUUGGCCGUCAAGAAGGGCUCAAACAAAAACUAAA
....(((.(((..((.(.(((((((((.(.(((..((((....)))).(((.(((....)))..)))......))).).))))))))).).))..)))..)))................. ( -37.60)
>DroYak_CAF1 9515 120 + 1
CUCAUCCGCUUAGCGCAGAGGAGCUCCUACCGCAACUGCAGGAGCAGCGCAGGUUUCUGGACGAUGCUAUUACGCGACUGGAGCUCUUGGCCGUCAAGAAGGGCUCAAACAAAAACUAAA
....(((.(((..(((..(((((((((...(((..((((....)))).(((.(((....)))..)))......)))...))))))))).).))..)))..)))................. ( -36.40)
>consensus
CUCAUCCACUUAGUGCUGAGGAGCUCCUACCGCAGCUGCAGGAGCAGCGCAGGUUUCUGGACGAUGCUAUUACGCGACUGGAGCUCUUGGCCGUCAAGAAGGGCUCGAACAAAAACUAAA
....(((.(((..((.(.(((((((((...(((.(((((....)))))(((.(((....)))..)))......)))...))))))))).).))..)))..)))................. (-37.82 = -38.02 +   0.20) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:32 2006