Locus 7008

Sequence ID X_DroMel_CAF1
Location 17,551,475 – 17,551,567
Length 92
Max. P 0.880796
window11451

overview

Window 1

Location 17,551,475 – 17,551,567
Length 92
Sequences 4
Columns 98
Reading direction forward
Mean pairwise identity 75.52
Mean single sequence MFE -10.40
Consensus MFE -6.84
Energy contribution -6.65
Covariance contribution -0.19
Combinations/Pair 1.08
Mean z-score -1.82
Structure conservation index 0.66
SVM decision value 0.91
SVM RNA-class probability 0.880796
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17551475 92 + 22224390
GAAAACCACAAAAAUAAACAAAAAAUAUAUAGUGAAUCAAUCCGAAUUCCGAUAAGU----GAGU-GAAUGAAAAACUCAACUGGAA-AUAGUGGGAA
.....((((...........................((.....)).(((((.....(----((((-.........)))))..)))))-...))))... ( -14.00)
>DroSec_CAF1 3282 75 + 1
GAAAACCACAAAAU-------------UAUAGUGAAUCAAUCCGAAUUCCGAUAAGA---------GAAUGAAAAACUCAAUUCAAA-AAUGUGGGAA
.....(((((...(-------------(((.(.((((........))))).))))..---------((((((.....)).))))...-..)))))... ( -10.70)
>DroSim_CAF1 2473 75 + 1
GAAAACCACAAAAA-------------UAUAGUGAAUCAAUCCGAAUUCCGAUAAGA---------GAAUGAAAAACUCAAUUCAAA-AAUGUGGGAA
.....(((((....-------------....(.((((........))))).......---------((((((.....)).))))...-..)))))... (  -9.80)
>DroEre_CAF1 7997 85 + 1
AAAAACCGCAAAAA-------------UAUAGUGAAUCAAUCCGCAUUCCGAUUAAAAAAAAAAUGAAAUGAAAAACUCAACAAGAAUAUAGUGGCUA
.....((((.....-------------....(((........)))........................(((.....)))...........))))... (  -7.10)
>consensus
GAAAACCACAAAAA_____________UAUAGUGAAUCAAUCCGAAUUCCGAUAAGA_________GAAUGAAAAACUCAACUCAAA_AAAGUGGGAA
.....((((......................(.((((........)))))...................(((.....)))...........))))... ( -6.84 =  -6.65 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:27:58 2006