| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 17,551,055 – 17,551,162 |
| Length | 107 |
| Max. P | 0.804800 |
| Location | 17,551,055 – 17,551,162 |
|---|---|
| Length | 107 |
| Sequences | 3 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 86.27 |
| Mean single sequence MFE | -27.10 |
| Consensus MFE | -18.53 |
| Energy contribution | -18.53 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.09 |
| Mean z-score | -2.71 |
| Structure conservation index | 0.68 |
| SVM decision value | 0.63 |
| SVM RNA-class probability | 0.804800 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 17551055 107 - 22224390 CAAGCAA-AGAGGGGGGCGUGGCAGCACGCCUUCGAAAUGCAUUUACAGAA----AAAACUGUAAAGAAUGGUUCUUAAAUUAUUUGAAUUGCACGCGAAGUAAAAGUGUAU ...((((-....(((((((((....)))))))))(((.....(((((((..----....)))))))......)))..............))))((((.........)))).. ( -29.40) >DroSec_CAF1 2869 111 - 1 CAAACCAAAGGGGGGGGCGUGGCAGCACGCCUUCGAAAUGCAUUUACAAAAAA-AAAAACUGAAUAGAAUGGUUCUUAAAAUAUUUCAUUUGCUCGCGAAGUAAAAGAGUAU ....((....))(((((((((....)))))))))...((((............-.......((((......))))..........((.((((((.....)))))).)))))) ( -22.50) >DroSim_CAF1 2061 109 - 1 CAAGCAAAAGG---AGGCGUGGCAGCACGCCUUCGAAAUGCAUUUACAAAAAAAAAAAAAUGAAUAGAAUGGUUCUUAAAAUAUAUCUUUUGCUCGCGAAGUAAAAGAGUAU ...(((...((---(((((((....)))))))))....)))...(((..............((((......))))..........(((((((((.....)))))))))))). ( -29.40) >consensus CAAGCAAAAGGGGGGGGCGUGGCAGCACGCCUUCGAAAUGCAUUUACAAAAAA_AAAAACUGAAUAGAAUGGUUCUUAAAAUAUUUCAUUUGCUCGCGAAGUAAAAGAGUAU ............(((((((((....)))))))))(((...(((((.....................))))).)))...............(((((...........))))). (-18.53 = -18.53 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:27:57 2006