Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,925,124 – 1,925,358 |
Length | 234 |
Max. P | 0.876525 |
Location | 1,925,124 – 1,925,244 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 91.75 |
Mean single sequence MFE | -47.16 |
Consensus MFE | -39.60 |
Energy contribution | -39.40 |
Covariance contribution | -0.20 |
Combinations/Pair | 1.18 |
Mean z-score | -1.48 |
Structure conservation index | 0.84 |
SVM decision value | 0.58 |
SVM RNA-class probability | 0.789727 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1925124 120 - 22224390 CCCUGUGGAAACUCUGGCAUGGUCAGCAAGGGUCCCCACAAAAAGGAACCUAAUCCGGGGCCAGCCGGCGAUGCGCCUUCCGACGAGUGUCCUUCCAGUUGCUUCCCUUGGGAGGCAAAG ..(((.(((.((((.(((.(((((.....((....)).......(((......)))..))))))))((((...)))).......)))).)))...)))((((((((....)))))))).. ( -46.40) >DroSec_CAF1 9094 120 - 1 CCCUGUGAAAACUCCGGCAUGGUCAGCAAAGGUCCCCACAAAAAGGAACCUAAUCCGGGGCCAGCCGGCGUUGCGCCUUCCGAUGAGUGUCCUUCCAGUUGCUUCCCUUGGGAGGCAAAG ..(((.((((((.(((((.(((((.....((((.((........)).)))).......)))))))))).)))(((((.......).))))..))))))((((((((....)))))))).. ( -43.70) >DroSim_CAF1 8720 120 - 1 CCCUGUGGAAACUCCGGCAUGGUCAGCAAAGGUCCCCACAAAAAGGAACCUAAUCCGGGGCCAGCCGGCGUUGCGCCUUCCGAUGAGUGUCCUUCUAGUUGCUUCCCUUGGGAGGCAAAG ..(((.(((.((((.(((.(((((.....((((.((........)).)))).......))))))))((((...)))).......)))).)))...)))((((((((....)))))))).. ( -44.00) >DroEre_CAF1 9158 120 - 1 CCCUGUGGGAACUCCGGCAUGGUCAGCAAGGGUCCCCACAAAAAGGAACCCAAUCCGGGGGCAGCCGCCGUUGCGCUUUCCGAGGAGUGUCCGUCGAGUUGCUUCCCUUGGGUGGAAAAC .((((((((.((((..((.......))..)))).)))))).......((((((...(((((((((((.((..((((((......)))))).)).)).))))))))).))))))))..... ( -49.00) >DroYak_CAF1 9195 120 - 1 CCCUGUGGGAACUCUGGCAUGGUCAGCAAGGGUCCCCACAGAAAGGAACCCAAUCCGGGAGCAGCCGGUGUUGCGCCUUCCACGGAGUGUCCUUCCAGUUGCUUCCCUUGGGAGGCAAAC ..(((((((.(((((.((.......)).))))).)))))))...((((..((.((((((((((((....)))))....))).)))).))...))))..((((((((....)))))))).. ( -52.70) >consensus CCCUGUGGAAACUCCGGCAUGGUCAGCAAGGGUCCCCACAAAAAGGAACCUAAUCCGGGGCCAGCCGGCGUUGCGCCUUCCGAGGAGUGUCCUUCCAGUUGCUUCCCUUGGGAGGCAAAG ..(((.(((.(((((((...(((((((..((((.((........)).))))...((((......)))).)))).)))..)))..)))).)))...)))((((((((....)))))))).. (-39.60 = -39.40 + -0.20)
Location | 1,925,244 – 1,925,358 |
---|---|
Length | 114 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 87.56 |
Mean single sequence MFE | -33.28 |
Consensus MFE | -28.34 |
Energy contribution | -28.14 |
Covariance contribution | -0.20 |
Combinations/Pair | 1.08 |
Mean z-score | -1.73 |
Structure conservation index | 0.85 |
SVM decision value | 0.89 |
SVM RNA-class probability | 0.876525 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1925244 114 + 22224390 CAGUGUGGCCAGCGACCAGCAACAUAACCACC------ACCAGCAGGAUCAUUCCCCGGAUCCGCAGCAGGAUUCCAGUCCCUCUAUCAUUAAAAGAGUGCUGGACAUGCUUAGGCCAUC ....((((((((((.((((((...........------....((.(((((........)))))))....((((....))))((((.........))))))))))...))))..)))))). ( -35.60) >DroSec_CAF1 9214 114 + 1 CAGUGUGGCCAGUGGCCAGCAACAUAACCACC------ACCAGCAGGAUCAUUCCCCGGAUCCGCAGCAGGAAUCCAGUCCCUCCAUCAUCAAAAGAGUGCUGGACAUGCUUAGGCCAUC ....((((((.((((............)))).------....((.(((((........)))))))((((....((((((..(((...........))).))))))..))))..)))))). ( -34.60) >DroSim_CAF1 8840 114 + 1 CAGUGUGGCCAGUGACCAGCAACAUAACCACC------ACCAGCAGGAUCAUUCCCCGGAUCCGCAGCAGGAAUCCAGUCCCUCCAUCAUCAAAAGAGUGCUGGACAUGCUUAGGCCAUC ....((((((......................------....((.(((((........)))))))((((....((((((..(((...........))).))))))..))))..)))))). ( -32.00) >DroEre_CAF1 9278 108 + 1 CAGUGUGGCCAGCGACCAGCAACAUAACCACAACAUCCA------------UCCCCAGGAUCCGCAGCAGGAAUCCAGUCCCUCCAUCAUCAAAAGAGUGCUGGAUAUGCUGAGGCCAUC ....((((((.((.....))..............((((.------------......))))...(((((...(((((((..(((...........))).))))))).))))).)))))). ( -31.80) >DroYak_CAF1 9315 120 + 1 CAGUGUGGCCAGCGACCAGCAACAUAACCACAACCUCCACCAGCAGGAGCAUACCCAGGACUCGCAGCAGGAAUCCAGUCCCUCCAUCAUCAAAAGAGUGCUGGACAUGCUGAGGCCAUC ....((((((.((.....)).............(((.(....).)))(((((..((((.((((......(((..........)))..........)))).))))..)))))..)))))). ( -32.39) >consensus CAGUGUGGCCAGCGACCAGCAACAUAACCACC______ACCAGCAGGAUCAUUCCCCGGAUCCGCAGCAGGAAUCCAGUCCCUCCAUCAUCAAAAGAGUGCUGGACAUGCUUAGGCCAUC ....((((((((((.((((((....................................((((((......))).))).....(((...........)))))))))...))))..)))))). (-28.34 = -28.14 + -0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:31 2006