Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 22,866 – 22,982 |
Length | 116 |
Max. P | 0.514478 |
Location | 22,866 – 22,982 |
---|---|
Length | 116 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 90.11 |
Mean single sequence MFE | -28.52 |
Consensus MFE | -20.75 |
Energy contribution | -21.68 |
Covariance contribution | 0.94 |
Combinations/Pair | 1.10 |
Mean z-score | -1.58 |
Structure conservation index | 0.73 |
SVM decision value | -0.04 |
SVM RNA-class probability | 0.514478 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 22866 116 + 22224390 UAAAAUCUAA----UCAAAUUAUUGACCCUAAUAUUUUGUAUUUUAAUUUUAAAGGCAAGGAAUUGAGACGCGCUCCAGUUCGCUAGACAGUGACGGGGAGUACGAGGGUCCGCCCAUAU ..........----..........((((((...........((((((((((........))))))))))((..((((...(((((....)))))...))))..))))))))......... ( -29.40) >DroSec_CAF1 10196 116 + 1 UAAAAUCAAA----UCAAAUUAUUGAUACUUAUAUUUUGUAUAAUAAUUUUAAAGGCAAAGUAAUGAGACGCGCUCCAGUUCGCUAGACAGUGACGGGGAGUACGAGGGUCCGCCCAUAU .........(----((((....))))).((((((((((((.(((.....)))...))))))).))))).((..((((...(((((....)))))...))))..)).(((....))).... ( -29.70) >DroSim_CAF1 10291 116 + 1 UAAAAUCUAA----UCAAAUUAUUGAUACUUAUAUUUUGUAUAAUAAUUUUAAAGGCAAAGUAAUGAGACGCGCUCCAGUUCGCUAGACAGUGACGGGGAGUACGAGGGUCCGCCCAUAU .........(----((((....))))).((((((((((((.(((.....)))...))))))).))))).((..((((...(((((....)))))...))))..)).(((....))).... ( -29.70) >DroYak_CAF1 4990 119 + 1 UAAAUU-UAAUCACUCAAAUUAUUGAUCUUUACAUUUUGCUUAUUCAUUUUAAAGGCAAAGCAAUGAGACGCGAUCCAGUUCGCUAGACAGUGACGGCGAGUACGAGGGUCCGCCCAUAU ......-.....((((...((((((.((((....((((((((...........))))))))....)))).((((......))))....))))))....))))....(((....))).... ( -25.30) >consensus UAAAAUCUAA____UCAAAUUAUUGAUACUUAUAUUUUGUAUAAUAAUUUUAAAGGCAAAGUAAUGAGACGCGCUCCAGUUCGCUAGACAGUGACGGGGAGUACGAGGGUCCGCCCAUAU ..............((((....))))..((((((((((((...............)))))))).)))).((.(((((...(((((....)))))...))))).)).(((....))).... (-20.75 = -21.68 + 0.94)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:01 2006