Locus 6999

Sequence ID X_DroMel_CAF1
Location 17,522,057 – 17,522,163
Length 106
Max. P 0.981566
window11432

overview

Window 2

Location 17,522,057 – 17,522,163
Length 106
Sequences 5
Columns 110
Reading direction reverse
Mean pairwise identity 81.88
Mean single sequence MFE -27.62
Consensus MFE -14.74
Energy contribution -16.06
Covariance contribution 1.32
Combinations/Pair 1.09
Mean z-score -3.16
Structure conservation index 0.53
SVM decision value 1.89
SVM RNA-class probability 0.981566
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17522057 106 - 22224390
AUUAUGUGAUUAACAUAACACAAAGGCGCCACAGCCACACAGCGGUAGCUUGCAACCA----GCAACUGGCAACUGGCAACUGGCAAGUUGCAACUGCAACAAUAAGUCG
.((((((.....))))))......(((((((..((((.....((((.(((.......)----)).)))).....))))...))))..(((((....))))).....))). ( -31.30)
>DroSec_CAF1 14482 88 - 1
AUUAUGUGAUUAACAUAACACAAAGGCGCCACAGCC----AGCAGUAGCUUGCAACCA----ACAAC--------------UGGCAAGUUGCAACUGCAACAAUAAGUCG
.((((((.....))))))......(((......)))----.((((((((((((.....----.....--------------..)))))))...)))))............ ( -22.90)
>DroEre_CAF1 10424 95 - 1
AUUAUGUGAUUAACAUAACACAAAGGCGCCACAGAC----AGCAGUAGCUUGCAAGCA----GCAAG-------UGGCAAGUGGCAAGUUGCAACUGCAACAAUAAGUCG
.((((((.....))))))......((((((((....----.((....((((((.....----)))))-------).))..)))))..(((((....))))).....))). ( -31.40)
>DroYak_CAF1 11091 99 - 1
AUUAUGUGAUUAACAUAACACAAAGGCGCCACAGGC----AGCAAUAGCUUGCAAGCAGCCAGCAAG-------UGGCAAGUUGCAAGUUGCAACUGCAACAAUAAGUCG
.((((((.....))))))......((((((((..((----(((....)).)))..((.....))..)-------))))..((((((.((....)))))))).....))). ( -31.00)
>DroAna_CAF1 9780 87 - 1
AUUAUGUGAUUAACAUAACACAAAGGC-----AGCC----AGCA---GCUAGCAACUU----GCAAC-------UGGCAGGCAGCAACUUGCAACUGCAACAAUAAGUCG
.((((((.....))))))......(((-----.(((----((..---((.........----))..)-------))))..((((..........))))........))). ( -21.50)
>consensus
AUUAUGUGAUUAACAUAACACAAAGGCGCCACAGCC____AGCAGUAGCUUGCAACCA____GCAAC_______UGGCAAGUGGCAAGUUGCAACUGCAACAAUAAGUCG
.((((((.....))))))......(((..............((....((((((.......................)))))).))..(((((....))))).....))). (-14.74 = -16.06 +   1.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:27:41 2006