Locus 6998

Sequence ID X_DroMel_CAF1
Location 17,517,791 – 17,517,893
Length 102
Max. P 0.807563
window11431

overview

Window 1

Location 17,517,791 – 17,517,893
Length 102
Sequences 5
Columns 107
Reading direction reverse
Mean pairwise identity 77.98
Mean single sequence MFE -29.48
Consensus MFE -8.68
Energy contribution -11.36
Covariance contribution 2.68
Combinations/Pair 1.11
Mean z-score -2.08
Structure conservation index 0.29
SVM decision value 0.64
SVM RNA-class probability 0.807563
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17517791 102 - 22224390
-----AUCAAGAAAAAGGGAUUCUCGGUAAAAUGCUUUUAAAGCGAAGCAUUUGGCGGGAAACAGCUCCAAUUUUCUUAUUAGAAGGGGCCCGAUGGGCGCAACUUC
-----...(((((((..(((((((((.((((.((((((......)))))))))).)))))).....)))..)))))))....((((..((((....)).))..)))) ( -32.60)
>DroSec_CAF1 10133 102 - 1
-----AUCAAGAAAAAGAGAUUCUCGGUAAAACGGUUUUAAAGCGAAGCAUUUGGCGGGAAAGGGCUCCAAUUUUCUUAUUAGAAGGGGCCCGAUGGGCUCAACCUC
-----...........(((.((((((.((((...(((((.....))))).)))).)))))).(((((((....((((....)))))))))))......)))...... ( -29.80)
>DroSim_CAF1 7014 102 - 1
-----AUCAUGAAAAAGAGAUUCUCGGUAAAACGGUUUUAAAGCGAAGCAUUUGGCGGGAAAGGGCUCCAAUUUUCUAAUUAGAAGGGGCCUGAUGGGCUCAACCUC
-----...........(((.((((((.((((...(((((.....))))).)))).)))))).(((((((....((((....)))))))))))......)))...... ( -26.90)
>DroEre_CAF1 6927 106 - 1
GAAAGAUAAAGAAAAAGAGGUUCGCUGGAAAAUGGCCUUAAAGCCAAGCAUUAGGCGAGAAAGAGCUCC-AUUUUCCCAUUAGAAGGGGCCAGAUGGACCGAACCUC
................(((((((...((((((((((((.((.((...)).))))))(((......))))-)))))))........((..((....)).))))))))) ( -31.60)
>DroYak_CAF1 6732 86 - 1
-----AUCAGGAAAAAGGG-------GGAAAAUGGCUUUGGAGCGCAGCAUUUGGCGGGAAAGCGCUGCAAUUUUCUCAUUAGAAGGGGCUU---------CCCUUC
-----.............(-------(((((((.(((....)))(((((.....((......))))))).))))))))....((((((....---------)))))) ( -26.50)
>consensus
_____AUCAAGAAAAAGAGAUUCUCGGUAAAAUGGUUUUAAAGCGAAGCAUUUGGCGGGAAAGAGCUCCAAUUUUCUCAUUAGAAGGGGCCCGAUGGGCUCAACCUC
................(((.((((((.((((...(((((.....))))).)))).))))))...(((((....((((....)))))))))..............))) ( -8.68 = -11.36 +   2.68)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:27:40 2006