| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 17,509,626 – 17,509,719 |
| Length | 93 |
| Max. P | 0.787139 |
| Location | 17,509,626 – 17,509,719 |
|---|---|
| Length | 93 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 72.75 |
| Mean single sequence MFE | -36.34 |
| Consensus MFE | -18.08 |
| Energy contribution | -20.86 |
| Covariance contribution | 2.78 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.82 |
| Structure conservation index | 0.50 |
| SVM decision value | 0.58 |
| SVM RNA-class probability | 0.787139 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 17509626 93 - 22224390 GGGACC------------AGGUCCAUCCA---UGAUAUCACCGCGUGCCGAAGAGCCCUCGCACAAACGGGUGGCCUACGGUCA---UCGCGGCAA---------CAAUGGCACCCACAU (((.((------------(((.....)).---........((((((((((.((.(((((((......)))).))))).))).))---.)))))...---------...)))..))).... ( -35.30) >DroSec_CAF1 22967 99 - 1 UGGACCGGGA------CCAGGUCCAACCA---UGAUAUCACCGCGUGCCGAGGAGCCCUCGCACAAACGGGUGGCCUACGGUCA---UCGCGGCAA---------CAAUGGUACCCACAU ((((((....------...))))))((((---(.......((((((((((.((.(((((((......)))).))))).))).))---.)))))...---------..)))))........ ( -41.50) >DroEre_CAF1 22858 111 - 1 GGGACCAGGACCGGGACCAGUUCCAUCCA---UGAUAUCACCGCGUGCCGAAGAGCCAUCGCACAAGCGGGUGGCCUACGGUCA---UCGCGGCAA---CACCAUCAAUGGCACCCACAU (((.((((((..((((....)))).))).---((((....((((((((((.((.((((((((....)).)))))))).))).))---.)))))...---....)))).)))..))).... ( -43.50) >DroWil_CAF1 24566 102 - 1 CGGUCCGGGA------CCGAA-CCAACUGCGCUCAAAUCAGA--G---UGAAGAAGCUUCGUACAAGAGGUCGGCCUAUCGUCAGAAUAUCGUCAAUAG------CAAUAACACUCACAU ((((..(((.------((((.-((..((.(((((......))--)---)).)).....((......)))))))))))))))..................------............... ( -21.00) >DroYak_CAF1 23478 108 - 1 GGGCCCAGGU------CCAGGUCCAACCA---UGAUAUCACCGCGUGCCGAGGAGCCCUCGCACAAACGGGUGGCCUACGGUCA---UCGCGGCAAUAGCAACAUCAAUGGCACCCACAU ((((....))------)).((((((...(---((.(((..((((((((((.((.(((((((......)))).))))).))).))---.)))))..)))....)))...))).)))..... ( -40.40) >consensus GGGACCAGGA______CCAGGUCCAACCA___UGAUAUCACCGCGUGCCGAAGAGCCCUCGCACAAACGGGUGGCCUACGGUCA___UCGCGGCAA_________CAAUGGCACCCACAU .(((((.((.......)).)))))................(((((.((((.((.(((((((......)))).))))).))))......)))))........................... (-18.08 = -20.86 + 2.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:27:35 2006