Locus 6994

Sequence ID X_DroMel_CAF1
Location 17,504,425 – 17,504,539
Length 114
Max. P 0.524786
window11424

overview

Window 4

Location 17,504,425 – 17,504,539
Length 114
Sequences 6
Columns 119
Reading direction forward
Mean pairwise identity 74.06
Mean single sequence MFE -46.49
Consensus MFE -11.61
Energy contribution -12.00
Covariance contribution 0.39
Combinations/Pair 1.37
Mean z-score -2.35
Structure conservation index 0.25
SVM decision value -0.02
SVM RNA-class probability 0.524786
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17504425 114 + 22224390
AUCACGAAUUGCAGCGGAGCCAGCCGGC-AGUAUCGAUGGAUGAACUCUCUGAGGUAGCGACGCAUGU-UAC--CCAG-GAUUCCAUCGCUGGCGAUAUCCUUUUGCAGUUGUUCAUCC
......((((((((.(((....((((((-......((((((.....((.(((.(((((((.....)))-)))--))))-)).))))))))))))....)))..))))))))........ ( -40.50)
>DroPse_CAF1 23556 114 + 1
ACUACGAACUGCAUAGGAGCAAGUCGCA-GGAAGCGAUGCAGCAGCUGCCUGAGGUAGCGCUGCACGU-UCC--CGCG-CAGGCUGUCCCGGGCAAUGUUCUGUUGCAGUUUCUCGUCC
...((((((((((..((((((.(.(((.-((((.((.((((((.((((((...)))))))))))))))-)))--.)))-)..(((......)))..))))))..))))))...)))).. ( -50.90)
>DroEre_CAF1 17690 114 + 1
AUGACGAAUUGCAGCGGAGCCAGCCGGC-AGUAGCGAUGGAUGAAUUGUCUGAGGUAGCGACGCCCGU-UGC--CCAG-GAAGCCAUCGCUGGCGAUAUCCUUUUGCAGUUGGUCAUCC
(((((.((((((((.((((((....)))-.((((((((((........((((.(((((((.....)))-)))--))))-)...)))))))).))....)))..)))))))).))))).. ( -50.90)
>DroYak_CAF1 17675 114 + 1
AUCACAAAUUGCAGCGGAGCCAGCCGGC-AGUAUCGAUGGAUGAACUGUCUGAGGUAGCGACGCCCGU-UAC--CCAG-GAGUCCAUCGCUGGCGAUAUCCUUUUGCAGUUGCUCAUCC
......((((((((.(((....((((((-......(((((((......((((.(((((((.....)))-)))--))))-).)))))))))))))....)))..))))))))........ ( -44.90)
>DroAna_CAF1 20337 117 + 1
ACCAUGAAUUGGAGAGGCGCUAGGCGCA-GGAAACGCCGAAAGACCUGGCCCAGAAAGCGACGCACGU-UUCUGCCAGAUAAACCGUCGCUGGCGAUGUCCUGUUGAAGCUGCUCAUCG
.(((.....))).(((..(((....(((-(((..(((((...((((((((..(((((.((.....)))-))))))))).......)))..)))))...))))))...)))..))).... ( -37.91)
>DroPer_CAF1 23746 116 + 1
ACUACGAACUGCAUAGGAGCAAGACGCAUGGAAGCGAUGCAGCAGCUGCCUGAGGUAGCGCUGCACGUUUCC--CGCG-CAGGCUGUCCCGGGCAAUGUUCUGUUGCAGUUUCUCGUCC
...((((((((((..((((((.(.(((..(((((((.((((((.((((((...)))))))))))))))))))--.)))-)..(((......)))..))))))..))))))...)))).. ( -53.80)
>consensus
ACCACGAAUUGCAGAGGAGCCAGCCGCA_AGAAGCGAUGGAUGAACUGUCUGAGGUAGCGACGCACGU_UAC__CCAG_GAGGCCAUCGCUGGCGAUAUCCUGUUGCAGUUGCUCAUCC
......(((((((..((((((((..((......))((((.....(((......))).(((.....)))................)))).)))))....)))...)))))))........ (-11.61 = -12.00 +   0.39)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:27:34 2006