Locus 6993

Sequence ID X_DroMel_CAF1
Location 17,504,269 – 17,504,386
Length 117
Max. P 0.788230
window11423

overview

Window 3

Location 17,504,269 – 17,504,386
Length 117
Sequences 6
Columns 117
Reading direction forward
Mean pairwise identity 81.65
Mean single sequence MFE -41.91
Consensus MFE -26.74
Energy contribution -27.44
Covariance contribution 0.70
Combinations/Pair 1.31
Mean z-score -2.26
Structure conservation index 0.64
SVM decision value 0.58
SVM RNA-class probability 0.788230
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17504269 117 + 22224390
GUCCACGAUCCGCACAUAAACUGAAUGGGAAACAAAUUCUGGAUGAAGAAAACGUUGCGUACGGCAUUGAGUCGGCACAGCUCGUCCUGCGGAUCGGUUAUUUGCAUGACGGACACU
((((.(((((((((........((((.(....)..)))).((((((.......((((.((.((((.....)))))).)))))))))))))))))))(((((....)))))))))... ( -43.61)
>DroSec_CAF1 17785 117 + 1
GUCCACGAUCCGCACAUAAUCUGAAUGGGAAACAGAUUCUGGAUGAAGAAAACGUUUCGUACGGCGUUGAGUCGGCACAGCUCGUCCUGCGGAUCGGUGAUUUGCAUGACGGACACU
((((.(((((((((........((((.(....)..)))).((((((.(((.....)))((.((((.....))))..))...)))))))))))))))((.((....)).))))))... ( -41.10)
>DroSim_CAF1 13338 117 + 1
GUCCACGAUCCGCACAUAAUCUGAAUGGGAAACAGAUUCUGGAUGAAGAAAACGUUUCGUACGGCGUUGAGUCGGCACAGCUCGUCCUGCGGAUCGGUUAUUUGCAUGACGGACACU
((((.(((((((((........((((.(....)..)))).((((((.(((.....)))((.((((.....))))..))...)))))))))))))))(((((....)))))))))... ( -43.00)
>DroEre_CAF1 17534 117 + 1
GUCCACGAUCCGCACAUAACCCCAAUGGGAAACAGAUUCUGGAUGAAGAAAAGGUUACGUACGGCGUGGCGUCGACACAGCUCGUCCUGCGGAUCGUUUAUAUGAAGCACGGACACU
((((..((((((((.....(((....)))...........((((((.......((((((.....))))))((....))...))))))))))))))((((.....))))..))))... ( -39.50)
>DroYak_CAF1 17519 117 + 1
GUCCACGAUCCGCACAUCACCUGAAUGGGAAACAGGUUCUGGAUGAACAAAAAGUUGCGUACGGCGUUGCGACGGCACAGCUCGUCCUGCGGAUCGGUUAUAUGCAAAACGGACACU
((((.(((((((((....(((((.........)))))...((((((.......((((((........))))))........)))))))))))))))(((........)))))))... ( -42.06)
>DroAna_CAF1 20181 117 + 1
GUCCAGGAGCCGCACAGCUCCACCACGGGAAAUAGGUUCUGCACGAAAAGCAGGUUGCGCCACCAGUGCCGGUGGCAGAUCUCGUCAUGUGGAACAGUCACGUAUAGCAGAGAGACU
((((.(((((......)))))...(((.((.....((((..((.((...(.(((((..((((((......)))))).)))))).)).))..))))..)).)))........).))). ( -42.20)
>consensus
GUCCACGAUCCGCACAUAACCUGAAUGGGAAACAGAUUCUGGAUGAAGAAAACGUUGCGUACGGCGUUGAGUCGGCACAGCUCGUCCUGCGGAUCGGUUAUUUGCAUGACGGACACU
((((.(((((((((........((((.(....)..)))).((((((.......(((..((.((((.....))))))..))))))))))))))))))((.....)).....))))... (-26.74 = -27.44 +   0.70)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:27:33 2006