Locus 6992

Sequence ID X_DroMel_CAF1
Location 17,496,400 – 17,496,520
Length 120
Max. P 0.625199
window11422

overview

Window 2

Location 17,496,400 – 17,496,520
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 86.39
Mean single sequence MFE -47.52
Consensus MFE -37.51
Energy contribution -37.35
Covariance contribution -0.16
Combinations/Pair 1.29
Mean z-score -2.11
Structure conservation index 0.79
SVM decision value 0.19
SVM RNA-class probability 0.625199
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17496400 120 + 22224390
GUCCAUGCGUGAGACCUGGCUGUCGGAGAAUCAACGUCUGGUCAGCCAGGAUAACUUUGGUUUCGAUCUGGCGGCCGUUGAGGCGGCGGCCAAGAAGCACGAAGCCAUCGAAACCGACAU
(((....(....).((((((((((((((......).))))).))))))))........((((((((((((((.(((((....))))).))).))).((.....))..))))))))))).. ( -53.80)
>DroPse_CAF1 12679 120 + 1
CUCCAUGAGGGAGACGUGGCUGUCGGAGAACCAGCGCCUGGUCAGCCAGGACAACUUUGGCUUCGAUCUGGCAGCCGUCGAGGCGGCGGCCAAGAAGCACGAGGCCAUCGAAACGGAUAU
((((.....)))).((((((((((((((((((((..(((((....)))))......)))).)))..)))))))))).(((((((..((((......)).))..))).)))).)))..... ( -51.20)
>DroGri_CAF1 9379 120 + 1
AUCCAUGCGUGAGACGUGGCUAUCCGAGAAUCAGCGUCUCGUCAGCCAGGAUAACUUUGGAUUCGAUUUGGCCGCAGUUGAAGCGGCUGCCAAGAAGCACGAAGCCAUCGAAACGGACAU
.(((...(....).(.(((((...(((((.......)))))..))))).)....(..(((.((((....((((((.......))))))((......)).)))).)))..)....)))... ( -37.00)
>DroWil_CAF1 9671 120 + 1
AUCGAUGCGUGAGACCUGGUUGUCGGAGAAUCAACGUCUCGUUAGCCAGGAUAAUUUCGGUUUCGAUCUGGCGGCCGUUGAGGCGGCAGCCAAGAAGCAUGAAGCCAUCGAAACUGAUAU
.((((((.((....((((((((...((((.......))))..)))))))).....(((((((((....((((.(((((....))))).)))).))))).))))))))))))......... ( -46.40)
>DroMoj_CAF1 10714 120 + 1
UUCCAUGCGUGAGACCUGGCUGUCGGAGAAUCAACGACUUGUUAGCCAGGAUAACUUUGGCUUCGAUCUGGCCGCUGUGGAGGCGGCUGCCAAGAAGCACGAAGCCAUUGAAACAGACAU
.......(....).(((((((((((.........)))).....)))))))....(..((((((((....(((((((.....)))))))((......)).))))))))..).......... ( -45.40)
>DroAna_CAF1 10524 120 + 1
CUCCAUGCGGGAGACCUGGCUGUCCGAGAACCAGCGCCUCGUCAGCCAGGACAACUUCGGUUUCGAUCUGGCUGCCGUGGAGGCCGCCGCCAAGAAGCACGAGGCUAUCGAGACGGACAU
((((.....)))).((((((((..((((.........)))).))))))))......((.((((((((..(((.(((.....))).)))(((..(.....)..))).)))))))).))... ( -51.30)
>consensus
AUCCAUGCGUGAGACCUGGCUGUCGGAGAAUCAACGUCUCGUCAGCCAGGAUAACUUUGGUUUCGAUCUGGCCGCCGUUGAGGCGGCGGCCAAGAAGCACGAAGCCAUCGAAACGGACAU
.((.(((.......((((((((...(((.........)))..))))))))....((((((((((....((((.(((((....))))).)))).))))).))))).))).))......... (-37.51 = -37.35 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:27:32 2006