| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 17,495,117 – 17,495,211 |
| Length | 94 |
| Max. P | 0.568679 |
| Location | 17,495,117 – 17,495,211 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 80.58 |
| Mean single sequence MFE | -29.43 |
| Consensus MFE | -22.82 |
| Energy contribution | -22.15 |
| Covariance contribution | -0.67 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.14 |
| Structure conservation index | 0.78 |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.568679 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 17495117 94 + 22224390 --------------------------GCCAUGACGACGGACAUUUCGAUUGUUCGCUGGGAUCCCAGCCAGGGUCCUGGCAACGAGUACAUCGAUGAGUACGAGUACGAUGGCGGCAACU --------------------------(((((..((..(((((.......)))))((..((((((......))))))..))..)).((((.(((.......))))))).)))))(....). ( -36.70) >DroVir_CAF1 8514 102 + 1 GAGCUGAC------------------AAAAUGACGACGGACAUUUCAAUUGUUCGAUGGGACCCCAGCCAGGGUCCAGGCAACGAAUAUAUCGAUGAAUACGAAUACGAUGGCGGCAACU ..((((.(------------------.......((.((((((.......))))))...((((((......))))))......))....(((((((........)).)))))))))).... ( -27.60) >DroGri_CAF1 7850 117 + 1 GAGCUGACAACAAUAACAAUAAC---AAAAUGACGACGGACAUUUCAAUUGUUCGAUGGGACCCCAGCCAGGGUCCUGGCAACGAAUAUAUCGAUGAAUACGAAUACGAUGGCGGCAACU ..((((.(...............---.......((.((((((.......)))))).(((....)))(((((....)))))..))....(((((((........)).)))))))))).... ( -28.80) >DroWil_CAF1 8294 94 + 1 --------------------------AUUAUGACGACGGACAUUUCAAUUGUUCGAUGGGAUCCUAGUCAGGGUCCUGGCAACGAAUAUAUCGAUGAAUACGAAUACGAUGGCGGCAAUU --------------------------..........((((((.......))))))..((((((((....)))))))).((..((....(((((((........)).))))).)))).... ( -22.80) >DroMoj_CAF1 8753 102 + 1 GAGCUGAC------------------AAAAUGACGACGGACAUUUCAAUUGUUCGAUGGGACCCCAGCCAGGGUCCAGGCAACGAAUAUAUCGAUGAAUACGAAUACGAUGGCGGCAAUU ..((((.(------------------.......((.((((((.......))))))...((((((......))))))......))....(((((((........)).)))))))))).... ( -27.60) >DroAna_CAF1 9234 101 + 1 -------------------GAACCAAACCAUGACGACGGACAUCUCGAUUGUUCGCUGGGAUCCCAGCCAGGGUCCCGGAAACGAGUACAUCGACGAGUACGAGUACGACGGGGGCAACU -------------------........((........(((((.......)))))(((((....)))))..))((((((....)..((((.(((.......)))))))....))))).... ( -33.10) >consensus __________________________AAAAUGACGACGGACAUUUCAAUUGUUCGAUGGGACCCCAGCCAGGGUCCUGGCAACGAAUAUAUCGAUGAAUACGAAUACGAUGGCGGCAACU .................................((.((((((.......)))))).))((((((......)))))).(....)(....(((((((........)).)))))....).... (-22.82 = -22.15 + -0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:27:31 2006