Locus 6990

Sequence ID X_DroMel_CAF1
Location 17,493,845 – 17,493,937
Length 92
Max. P 0.946619
window11420

overview

Window 0

Location 17,493,845 – 17,493,937
Length 92
Sequences 6
Columns 99
Reading direction forward
Mean pairwise identity 76.57
Mean single sequence MFE -18.96
Consensus MFE -10.01
Energy contribution -11.07
Covariance contribution 1.06
Combinations/Pair 1.11
Mean z-score -2.29
Structure conservation index 0.53
SVM decision value 1.36
SVM RNA-class probability 0.946619
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17493845 92 + 22224390
GCGGAGAAAGUGCGGCAAUAAAAAAA--CAAAAAAAUAUGUCAAGUGGAAAAAGUACAGCCCAA----GUACUUCGCCCAUUUUCAUUGCAACCUA-AA
((((.(((((((.(((.........(--((........)))..........((((((.......----)))))).)))))))))).))))......-.. ( -20.90)
>DroPse_CAF1 9521 86 + 1
--GGAGAAAGUGCCA-AGUAAAAAUG--UACUGUAGUAGACCGAGAGGCA---GUUAAACAUAUGAACAUACUAUG--UAUUUUCAUUGCAUCCA---A
--(((((((((((..-((((......--))))(((((((.((....))).---(((.........))).)))))))--)))))))......))).---. ( -16.70)
>DroSec_CAF1 6999 91 + 1
GCGGAGAAAGUGCGGCAAUAAACAAA----AAAUAAUAUAUCAAGUGGAAAAAGUACAGCCCAA----GUACUUCGCCCAUUUUCAUUGCAACCCAAAA
((((.(((((((.(((..........----..........((.....))..((((((.......----)))))).)))))))))).))))......... ( -20.80)
>DroSim_CAF1 7255 91 + 1
GCGGAGAAAGUGCGGCAAUAAACAAA----AAAUAAUAUAUCAAGUGGAAAAAGUACAGCCCAA----GUACUUCGCCCAUUUUCAUUGCAGCCCAAAA
((((.(((((((.(((..........----..........((.....))..((((((.......----)))))).)))))))))).))))......... ( -20.80)
>DroEre_CAF1 7063 86 + 1
GGGGAGAAAGUGUGGCAAUAAAC--------AGAAAAAUAUCAAGUGGAAAAAGUACAACCCAA----GUACUUCGCCCAUUUUCAUUGCAGCCCA-AA
.(((.(((((((.(((.......--------.((......)).........((((((.......----)))))).)))))))))).......))).-.. ( -19.40)
>DroYak_CAF1 7006 93 + 1
GGGGAGAAAGUGC-GCAAUAAACCAAAAAAAAAAAAACUAUCAAGUGGAAAAAGUACAGCCCAA----GUACUUCGCCCAUUUUCAUUGCAGUCCA-AA
..((((((((((.-((......(((....................)))...((((((.......----)))))).)).))))))).......))).-.. ( -15.16)
>consensus
GCGGAGAAAGUGCGGCAAUAAACAAA____AAAAAAUAUAUCAAGUGGAAAAAGUACAGCCCAA____GUACUUCGCCCAUUUUCAUUGCAGCCCA_AA
.....(((((((.(((........................((....))...((((((...........)))))).)))))))))).............. (-10.01 = -11.07 +   1.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:27:30 2006