Locus 6989

Sequence ID X_DroMel_CAF1
Location 17,489,692 – 17,489,787
Length 95
Max. P 0.954123
window11419

overview

Window 9

Location 17,489,692 – 17,489,787
Length 95
Sequences 6
Columns 96
Reading direction forward
Mean pairwise identity 77.73
Mean single sequence MFE -29.19
Consensus MFE -18.13
Energy contribution -19.35
Covariance contribution 1.22
Combinations/Pair 1.20
Mean z-score -2.22
Structure conservation index 0.62
SVM decision value 1.44
SVM RNA-class probability 0.954123
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17489692 95 + 22224390
-CUUACUGGUCAAUAUUACCCUACUCACCAGAUCCUCGGGAUGCUUGAGCGUGAGCUUAAGCAUAAACGACGGCACCUUCAGCAUAUCCACGCACA
-....(((((................)))))..(((((..((((((((((....))))))))))...))).))........((........))... ( -28.69)
>DroVir_CAF1 3508 75 + 1
---------------------CACUCACCAGAUCGUCGGAGUGCUUGAGCGCCAGCUUGAGCAUGAACGAGGGCACCUUCAGCAUAUCGACGCACA
---------------------............((((((.(((((..(((....)))..)))))....((((....))))......)))))).... ( -26.30)
>DroPse_CAF1 5120 87 + 1
------UGGUU---GCGGGACCACUCACCAGAUCGUCGGAAUGCUUAAGCGCCAGCUUAAGCAUGAAGGAGGGCCCCUUCAUCAUUUCCACGCACA
------....(---(((.(((...((....))..)))(((((((((((((....)))))))))((((((......))))))....)))).)))).. ( -31.70)
>DroEre_CAF1 2884 96 + 1
ACUUUCUGGUUUAUAUUACCCUACUCACCAGAUCCUCGGGAUGCUUGAGCGUGAGCUUGAGCAUGAACGACGGCACCUUGAGCAUGUCCACGCACA
....((((((................)))))).(((((..(((((..(((....)))..)))))...))).))........((........))... ( -28.39)
>DroYak_CAF1 2877 96 + 1
ACUUUCUGGUUAAUAUUACCCUACUCACCAGAUCCUCGGGAUGCUUGAGCGUGAGCUUGAGCAUGAACGACGGCACCUUGAGCAUGUCCACGCACA
....((((((................)))))).(((((..(((((..(((....)))..)))))...))).))........((........))... ( -28.39)
>DroPer_CAF1 5228 87 + 1
------UGGUU---GCGGGACCACUCACCAGAUCGUCGGAAUGCUUAAGCGCCAGCUUAAGCAUGAAGGAGGGCCCCUUCAUCAUUUCCACGCACA
------....(---(((.(((...((....))..)))(((((((((((((....)))))))))((((((......))))))....)))).)))).. ( -31.70)
>consensus
______UGGUU___AUUACCCCACUCACCAGAUCCUCGGAAUGCUUGAGCGCCAGCUUAAGCAUGAACGACGGCACCUUCAGCAUAUCCACGCACA
................................((.(((..((((((((((....))))))))))...))).))....................... (-18.13 = -19.35 +   1.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:27:29 2006