Locus 6987

Sequence ID X_DroMel_CAF1
Location 17,486,289 – 17,486,398
Length 109
Max. P 0.668527
window11415

overview

Window 5

Location 17,486,289 – 17,486,398
Length 109
Sequences 5
Columns 109
Reading direction reverse
Mean pairwise identity 91.28
Mean single sequence MFE -28.80
Consensus MFE -23.52
Energy contribution -24.36
Covariance contribution 0.84
Combinations/Pair 1.11
Mean z-score -1.45
Structure conservation index 0.82
SVM decision value 0.29
SVM RNA-class probability 0.668527
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17486289 109 - 22224390
CUGGCAUUCGGCAUUGAGUUUUGUGUUUUGAUUCCUGAAUCGAGUCAGGACGUAUCUGACCUGCUUUUUCAGUGUGCGUUUACGAUGCUGAUUCGUAAUUGUCCUUUGU
..((((.(((((((((........((((((((((.......))))))))))((((((((.........)))).)))).....)))))))))........))))...... ( -28.90)
>DroSec_CAF1 4178 109 - 1
CUGGCAUUCGGCAUUGAGUUUUGUGUUUUGAUUCCUGAAUCGAGUCAGGACGUAUCUGACCUGCUUUUCCAGUGUGCGUUUACGAUGCUGAUUCGUAAUUGUCCUUUGU
..((((.(((((((((........((((((((((.......))))))))))(((((((...........))).)))).....)))))))))........))))...... ( -27.60)
>DroSim_CAF1 3960 109 - 1
CUUGCAUUCGGCAUUGAGUUUUGUGUUUUGAUUCCUGAAUCGAGUCAGGACGUAUCUGACCUGCUUUUCCAGUGUGCGUUUACGAUGCUGAUUCGUAAUUGUCCUUUGU
.((((..(((((((((........((((((((((.......))))))))))(((((((...........))).)))).....)))))))))...))))........... ( -28.40)
>DroEre_CAF1 4248 109 - 1
CUGGCAUUCGGCAUUGUGUUUUGUAUCUUGUAUCCUGAAUGGAGUCAGGACGUUUUUGGACUCCUUUUCCAGUGUGCGUUUACGAUGCUGAUUCGUAAUUGCCUUUUGU
..((((.(((((((((((...(((((.(((......(((.((((((..((....))..))))))..)))))).)))))..)))))))))))........))))...... ( -33.20)
>DroYak_CAF1 4308 109 - 1
CUGGCAUUCGGCUUUGAGUUUUGUGUUUUGAAUCCUGAUUUGAGUCAGGACGUUUUAGGCAUCCUCUUCCAGUGUGCGUUUACGAUGCUGAUUCGUAAUUGUCUUUUGU
...(((((.((....(((....((((((.((((((((((....)))))))..))).)))))).)))..)))))))(((.((((((.......)))))).)))....... ( -25.90)
>consensus
CUGGCAUUCGGCAUUGAGUUUUGUGUUUUGAUUCCUGAAUCGAGUCAGGACGUAUCUGACCUGCUUUUCCAGUGUGCGUUUACGAUGCUGAUUCGUAAUUGUCCUUUGU
..((((.(((((((((................((((((......))))))(((((((((.........)))).)))))....)))))))))........))))...... (-23.52 = -24.36 +   0.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:27:26 2006