| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 17,484,361 – 17,484,464 |
| Length | 103 |
| Max. P | 0.522637 |
| Location | 17,484,361 – 17,484,464 |
|---|---|
| Length | 103 |
| Sequences | 5 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 83.89 |
| Mean single sequence MFE | -23.32 |
| Consensus MFE | -14.50 |
| Energy contribution | -15.10 |
| Covariance contribution | 0.60 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.83 |
| Structure conservation index | 0.62 |
| SVM decision value | -0.02 |
| SVM RNA-class probability | 0.522637 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 17484361 103 - 22224390 AACAGGUUA----UC-----UCCUGUGAUAUUUUAAAAUAUUACCUUAACAACCGAUUGAAUGAAUCAAUUUGCGAUGGAUACAAUGUUACAACAUUGUGUCAUGUUGAUAG .(((((...----..-----.)))))((((((....))))))...((((((...((((((.....)))))).......((((((((((....)))))))))).))))))... ( -25.00) >DroSec_CAF1 2300 105 - 1 AACAGGUUA----UGCC---UUAUGUGAUAUCUUCAAAUAUUACCUUUACACCUGAUUGAAUGAAUCAAUUUGCGAUAGAUACAAUGUUACAACAUUGUGUCAUGUUGAUAG ..(((((..----....---....(((((((......)))))))......)))))(((((.....)))))...(((((((((((((((....)))))))))).))))).... ( -24.39) >DroSim_CAF1 2052 105 - 1 AACAGGUUA----UCCC---UUAUGUGAUAUCUUCAAAUAUUACCUUUACACCUGAUUGAAUGAAUCAAUUUGCGAUGGAUACAAUGUUACAACAUUGUGUCAUGUUGAUAA ..(((((..----....---....(((((((......)))))))......)))))(((((.....)))))...(((((((((((((((....)))))))))).))))).... ( -23.09) >DroEre_CAF1 2295 111 - 1 AACAGGUUAUCUAUCCUAGGCCA-UUGAUAUUUUCAAAUAUUCACUUUUUAACUGAUUGAGUGAAUCAGUUUUCGAUGGAUACAAGGUUACAACAUUAUGUCAUGUUAAUAG (((..((.(((((((..((((..-((((.....))))..((((((((...........))))))))..))))..)))))))))...)))..(((((......)))))..... ( -20.70) >DroYak_CAF1 2327 107 - 1 AACAGGUUA----UCCCAGGUUA-UUGAUAUCUUCGAAUAUUCACUUUUGAACUGAUUGAGUGAAUCAUUUGUCGAUGGAUACAAGGUUACAACAUUGUGUCAUGUUAAUAG ....((...----..))....((-((((((((..(((((((((((((...........)))))))).)))))..))).(((((((.((....)).)))))))..))))))). ( -23.40) >consensus AACAGGUUA____UCCC___UUAUGUGAUAUCUUCAAAUAUUACCUUUACAACUGAUUGAAUGAAUCAAUUUGCGAUGGAUACAAUGUUACAACAUUGUGUCAUGUUGAUAG ((((....................(((((((......)))))))..........((((((.....)))))).......((((((((((....)))))))))).))))..... (-14.50 = -15.10 + 0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:27:17 2006