Locus 6982

Sequence ID X_DroMel_CAF1
Location 17,481,029 – 17,481,134
Length 105
Max. P 0.933746
window11403

overview

Window 3

Location 17,481,029 – 17,481,134
Length 105
Sequences 6
Columns 107
Reading direction forward
Mean pairwise identity 73.27
Mean single sequence MFE -27.15
Consensus MFE -16.33
Energy contribution -16.38
Covariance contribution 0.06
Combinations/Pair 1.28
Mean z-score -1.76
Structure conservation index 0.60
SVM decision value 1.23
SVM RNA-class probability 0.933746
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17481029 105 + 22224390
GCGAUAAUCUGCAAUGGAAUAUUGGCAUUCUGGGCUGCCAGGAUGCUAAACACAUGGAAUGAAAA-GAAA-AAAAAUUCUUUAAUGCUUGAAAUUGCCUUAGAUCGU
(((((.....(((((......((((((((((((....)))))))))))).............(((-(((.-.....))))))..........))))).....))))) ( -29.10)
>DroPse_CAF1 474 96 + 1
GCAAUGAUCUGCAACGGAAUGUUGGCAUUCUGGGCGGCCAAAAUGCUGUCAACGUAACCCAUAAA-UUAGUAAGAG----GGAGCGCUUGCAAAGAUC------CCU
.....((((((((((((((((....)))))))((((((......))))))..(((..(((.....-.........)----)).))).))))..)))))------... ( -27.24)
>DroSim_CAF1 389 105 + 1
GCGAUAAUCUGCAAUGGAAUGUUGGCAUUCUGGGCUGCCAGGAUGCUAAACACGAAGAACAAAAA-UAAA-AACAAUUCUCUAAUGCUUGAAAAUGCCUUAGAUCGU
((((...(((....((.....((((((((((((....)))))))))))).))...))).......-....-........(((((.((........)).))))))))) ( -26.60)
>DroEre_CAF1 440 105 + 1
GCGAUAAUCUGCAAUGGAAUGUUUGCAUUCUGGGCUGCCAGGAUGCUAAACACGUGAAACGAAAA-GAAA-AACAAAUCUCUUAUGCUUCGAAACGCCUUGAAUCGU
(((((.....(((..(((.((((((((((((((....))))))))).)))))((.....))....-....-........)))..))).((((......))))))))) ( -26.30)
>DroYak_CAF1 437 106 + 1
GCGAUAAUCUGCAAUGGAAUGUUGGCAUUCUGUGCUGCCAGGAUGCUAAACACAUGAAACGGAAAGGAAG-AACCAAUCCUUAAUGCUUGUAAAUGCCUUAAAUCGU
(((((..((((..(((.....(((((((((((......)))))))))))...)))....))))(((((..-......)))))...((........)).....))))) ( -26.40)
>DroPer_CAF1 474 96 + 1
GCAAUGAUCUGCAACGGAAUGUUGGCAUUCUGGGCGGCCAAAAUGCUGUCAACGUAACCCAUAAA-UUAGUAAGAG----GGAGCGCUUGCAAAGAUC------CCU
.....((((((((((((((((....)))))))((((((......))))))..(((..(((.....-.........)----)).))).))))..)))))------... ( -27.24)
>consensus
GCGAUAAUCUGCAAUGGAAUGUUGGCAUUCUGGGCUGCCAGGAUGCUAAACACGUAAAACAAAAA_GAAA_AACAA_UCUCUAAUGCUUGAAAAUGCCUUA_AUCGU
(((......))).(((.....((((((((((((....))))))))))))...))).................................................... (-16.33 = -16.38 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:27:16 2006