Locus 6981

Sequence ID X_DroMel_CAF1
Location 17,479,823 – 17,479,943
Length 120
Max. P 0.590379
window11402

overview

Window 2

Location 17,479,823 – 17,479,943
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 99.72
Mean single sequence MFE -31.63
Consensus MFE -31.75
Energy contribution -31.62
Covariance contribution -0.14
Combinations/Pair 1.03
Mean z-score -0.63
Structure conservation index 1.00
SVM decision value 0.11
SVM RNA-class probability 0.590379
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17479823 120 + 22224390
AUGUUAUUUCUUCCAAACUUGAUUCUGAAGCCGAAACGAAUUGACUCUUAUAUGUGCAUGUAAUGAGCUGAUGAUCUGGAGGGGCUGGCUCUGGAGGAGUUGUUGGAGGAGGGAAUAUCU
(((((.((((((((((....((((((.............(((..(((((((((....)))))).)))..)))..((..(((.......)))..)))))))).)))))))))).))))).. ( -31.20)
>DroWil_CAF1 11157 120 + 1
AUGUUAUUUCUUCCAAACUUGAUUCUGAAGCCGAAACGAAUUGACUCUUAUAUGUGCAUGUAAUGAGCUGAUGAUCUGGAGGGGCUGGCUCUGGAGGAGUUGUUGGAGGAGGGAAUAUCU
(((((.((((((((((....((((((.............(((..(((((((((....)))))).)))..)))..((..(((.......)))..)))))))).)))))))))).))))).. ( -31.20)
>DroYak_CAF1 9794 120 + 1
AUGUUAUUUCUUCCAAACUUGAUUCUGAAGCCGAAACGAAUUGACUCUUAUAUGUGCAUGUAAUGAGCUGAUGAUCUGGAGGGGCUGGCUCUGGAGGAGUUGUUGGAGGAGGGAAUAUCU
(((((.((((((((((....((((((.............(((..(((((((((....)))))).)))..)))..((..(((.......)))..)))))))).)))))))))).))))).. ( -31.20)
>DroMoj_CAF1 11354 120 + 1
AUGUUAUCUCUUCCAAACUUGAUUCUGAAGCCGAAACGAAUUGACUCUUAUAUGUGCAUGUAAUGAGCUGAUGAUCUGGAGGGGCUGGCUCUGGAGGAGUUGUUGGAGGAGGGAAUAUCU
(((((..(((((((((....((((((.............(((..(((((((((....)))))).)))..)))..((..(((.......)))..)))))))).)))))))))..))))).. ( -33.80)
>DroAna_CAF1 41282 120 + 1
AUGUUAUUUCUUCCAAACUUGAUUCUGAAGCCGAAACGAAUUGACUCUUAUAUGUGCAUGUAAUGAGCUGAUGAUCUGGAGGGGCUGGCUCUGGAGGAGUUGUUGGAGGAGGGAAUAUCU
(((((.((((((((((....((((((.............(((..(((((((((....)))))).)))..)))..((..(((.......)))..)))))))).)))))))))).))))).. ( -31.20)
>DroPer_CAF1 19397 120 + 1
AUGUUAUUUCUUCCAAACUUGAUUCUGAAGCCGAAACGAAUUGACUCUUAUAUGUGCAUGUAAUGAGCUGAUGAUCUGGAGGGGCUGGCUCUGGAGGAGUUGUUGGAGGAGGGAAUAUCU
(((((.((((((((((....((((((.............(((..(((((((((....)))))).)))..)))..((..(((.......)))..)))))))).)))))))))).))))).. ( -31.20)
>consensus
AUGUUAUUUCUUCCAAACUUGAUUCUGAAGCCGAAACGAAUUGACUCUUAUAUGUGCAUGUAAUGAGCUGAUGAUCUGGAGGGGCUGGCUCUGGAGGAGUUGUUGGAGGAGGGAAUAUCU
(((((.((((((((((....((((((.............(((..(((((((((....)))))).)))..)))..((..(((.......)))..)))))))).)))))))))).))))).. (-31.75 = -31.62 +  -0.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:27:15 2006