| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 17,479,348 – 17,479,446 |
| Length | 98 |
| Max. P | 0.946929 |
| Location | 17,479,348 – 17,479,446 |
|---|---|
| Length | 98 |
| Sequences | 4 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 80.45 |
| Mean single sequence MFE | -21.00 |
| Consensus MFE | -13.32 |
| Energy contribution | -13.33 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.17 |
| Mean z-score | -2.35 |
| Structure conservation index | 0.63 |
| SVM decision value | 1.37 |
| SVM RNA-class probability | 0.946929 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 17479348 98 - 22224390 AGUUUGUAAUAUACAAUGUUAGCAAUUUGUCGAAUGGUAUAUUGCAGAA-----------UUGUGAUAAAGUUGCAUAUGCAUAUUGACGAGAAAGUGUAUAUAUAUAU ....(((((((((((.((....)).((((((((...((((((.((((..-----------(((...)))..))))))))))...))))))))....))))))).)))). ( -20.60) >DroSec_CAF1 9404 98 - 1 AGUUUGUAAUAUACAAUGUUAGCAAUUUGGCGAAUGGUAUAUUGCAGAA-----------UUGUGAUAAAGUUGCAUAUGCAUAUUAACGAGAAAGUGUAUAUAUAUAU ..((((((((((((...(((.((......)).))).)))))))))))).-----------..(..((...))..)((((((((.((......)).))))))))...... ( -20.40) >DroSim_CAF1 9752 87 - 1 AGUUUGUAAUAUACAAUGCUAGCAAUUUGGCGAAUGGUAUAUUGCAGAA-----------UUGUGAUAAAG-----------UAUUGACGAGAAAUUGUAUAUAUAUAU ..((((((((((((..((((((....))))))....)))))))))))).-----------..........(-----------(((..((((....))))....)))).. ( -20.50) >DroEre_CAF1 9047 102 - 1 AGUUUUUAAUAUGCAAUGCUAACAAUUUGGCGAAUGGUAUAUUGCAGAAUUUUAUACUAAUUGUGAUCAAGUUGCGUAU--AUA---UUGCGAAAGUGUAUGU--AUAU ........((((((((((((..(((((((((((.(((((((...........))))))).))))...)))))))((((.--...---.))))..))))).)))--)))) ( -22.50) >consensus AGUUUGUAAUAUACAAUGCUAGCAAUUUGGCGAAUGGUAUAUUGCAGAA___________UUGUGAUAAAGUUGCAUAU__AUAUUGACGAGAAAGUGUAUAUAUAUAU ..((((((((((((..((((((....))))))....))))))))))))............................................................. (-13.32 = -13.33 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:27:13 2006