Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,924,605 – 1,924,724 |
Length | 119 |
Max. P | 0.814245 |
Location | 1,924,605 – 1,924,724 |
---|---|
Length | 119 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 93.30 |
Mean single sequence MFE | -31.80 |
Consensus MFE | -25.55 |
Energy contribution | -25.80 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.00 |
Mean z-score | -2.18 |
Structure conservation index | 0.80 |
SVM decision value | 0.66 |
SVM RNA-class probability | 0.814245 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1924605 119 + 22224390 AAGCAAAGAGAAACGGAGAUAACAAUACAGAUA-AGAAGAGUGUGUAGGUGAAUGGACACAUCAAAAUUUUCCAGUUUUUCUCCAAGGGUCCAAGGGAAAUUCUGGCACCGCUUGCUGCU .((((.(((((((((((((......((((.((.-......)).))))((((........)))).....))))).)))))))).((((((((((..(....)..))).))).)))).)))) ( -30.70) >DroSec_CAF1 8575 119 + 1 AAGCAAAGAGAAACGGAGAUAACAAUACAGAUA-AGAAGAGUGUGUAGGUGAAUGGACACAUCAAAAUUUUCCAGUUUUUCUCCAAGGGUCCAAGGGAAAUUCUGGCACCGCUUGCUGCU .((((.(((((((((((((......((((.((.-......)).))))((((........)))).....))))).)))))))).((((((((((..(....)..))).))).)))).)))) ( -30.70) >DroEre_CAF1 8643 118 + 1 AAGCAAAGAGAAACGGAGAUACAAAUACAGAUA-ACAAGAGUGUGUAGGUGAAUGGAAACAUAAAAAUUUUCCAGUUUUUC-CCUAGGGUCCAGGGGAAAUUCUGGCACCGCUUGCUGAU .(((((.((((((((((((..((..((((.((.-......)).))))..)).(((....)))......))))).)))))))-.....(((((((((....)))))).)))..)))))... ( -35.50) >DroYak_CAF1 8679 119 + 1 AAGCAAAGAGAAAGGGCGAUACAAAUACAGAAACAAAAGAGUGUGUAGGUGAAUGGUCACAUAAAAAUUUUCCAGUUUUUC-CCAAGGGUCCAAGGGAAAUUCUGGCACCGCUUGCUGCU .((((..(((...(((((((.((..((((.(..(....)..).))))..))....)))..............(((..((((-((..(....)..))))))..))))).)).)))..)))) ( -30.30) >consensus AAGCAAAGAGAAACGGAGAUAAAAAUACAGAUA_AGAAGAGUGUGUAGGUGAAUGGACACAUAAAAAUUUUCCAGUUUUUC_CCAAGGGUCCAAGGGAAAUUCUGGCACCGCUUGCUGCU .(((((...................((((.((........)).))))((((.(((....))).........((((..((((.((..(....)..))))))..))))))))..)))))... (-25.55 = -25.80 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:28 2006