Locus 6978

Sequence ID X_DroMel_CAF1
Location 17,476,095 – 17,476,193
Length 98
Max. P 0.948844
window11399

overview

Window 9

Location 17,476,095 – 17,476,193
Length 98
Sequences 6
Columns 113
Reading direction forward
Mean pairwise identity 74.31
Mean single sequence MFE -28.28
Consensus MFE -17.84
Energy contribution -17.73
Covariance contribution -0.11
Combinations/Pair 1.32
Mean z-score -1.80
Structure conservation index 0.63
SVM decision value 1.39
SVM RNA-class probability 0.948844
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17476095 98 + 22224390
CGCUUGGAGAAGAAGUCCUUCAGUGCCGUGGCCACGGCAUUGACGGGAAUGUCGAGCGCAUCAAUCUCAGUAUUGGUAUCUGCAUU--------------UGAA-AAAAUCAU
(((((((........((((((((((((((....)))))))))).))))...)))))))..((((...(((.........)))...)--------------))).-........ ( -31.60)
>DroGri_CAF1 10928 101 + 1
CGUUUCGAGAAGAAAUCCUUCAAUGCGGUAGCAACCGCAUUCACUGGAAUAUCCAGCACGUCAAUAAUUGUAUUGGUAUCUAUA------AGAA------UAUAAAUCAAUAU
(((.....((((.....))))((((((((....))))))))..((((.....)))).))).........((((((((...((((------....------)))).)))))))) ( -22.10)
>DroEre_CAF1 5742 98 + 1
CGCUUGGAGAAGAAGUCCUUCAGUGCCGUGGCCACGGCAUUCACGGGUAUGUCCAGCGCAUCAAUCUCAGUAUUGGUAUCUGGAUU--------------UGAA-AACAUUAU
.(((((((((((.....)))).(((((((....))))))))).)))))..((((((...((((((......))))))..)))))).--------------....-........ ( -28.00)
>DroYak_CAF1 5905 98 + 1
CGCUUGGAGAAGAAGUCCUUCAGUGCCGUGGCCACGGCAUUGACGGGAAUAUCCAGCGCAUCAAUCUCAGUAUUGGUAUCUGGAUU--------------GCAA-GACAUUAU
((((.(((.......((((((((((((((....)))))))))).))))...)))))))...(((((.(((.........)))))))--------------)...-........ ( -34.50)
>DroMoj_CAF1 7560 98 + 1
CGCUUCGAAAAGAAGUCCUUGAGCGCGGUGGCCACCGCAUUUACUGGUAUAUCCAGCACAUCAAUAAUUGUAUUGGUAUCUAAC--------AC------CAAG-AAUAAUAU
.(((((.....)))))..((((..(((((....))))).....((((.....))))....))))..(((((.(((((.......--------))------))).-.))))).. ( -24.50)
>DroPer_CAF1 15971 112 + 1
CGUUUCGAGAAGAAGUCCUUCAGCGCCGUAGCAACGGCAUUGACGGGUAUGUCCAGAACAUCGAUGACGGUGUUGACAUCUGAAUUGGCAUGAAAAAAAUUAAA-AAAACAAU
(((.((((..(((..(((.((((.(((((....))))).)))).)))..((((...(((((((....))))))))))))))...)))).)))............-........ ( -29.00)
>consensus
CGCUUCGAGAAGAAGUCCUUCAGUGCCGUGGCCACGGCAUUGACGGGAAUAUCCAGCACAUCAAUCACAGUAUUGGUAUCUGAAUU______________UAAA_AACAUUAU
..........(((..(((.((((((((((....)))))))))).)))............((((((......)))))).)))................................ (-17.84 = -17.73 +  -0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:27:12 2006