Locus 6976

Sequence ID X_DroMel_CAF1
Location 17,467,632 – 17,467,735
Length 103
Max. P 0.764263
window11393

overview

Window 3

Location 17,467,632 – 17,467,735
Length 103
Sequences 3
Columns 112
Reading direction forward
Mean pairwise identity 86.61
Mean single sequence MFE -24.13
Consensus MFE -21.03
Energy contribution -21.37
Covariance contribution 0.34
Combinations/Pair 1.11
Mean z-score -1.83
Structure conservation index 0.87
SVM decision value 0.51
SVM RNA-class probability 0.764263
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17467632 103 + 22224390
CCAAUAAAUGAUUUUAUUUUGUAGUGGAAACGGCAGGUUCCCAUUGCUAAUUAUAAUGG---------AUGUUUACUAUUGCAUACGUACGCAUGUUCCAUUACUAAUUAUA
..((((((....))))))..(((((((.(((.....))).)))))))((((((((((((---------((((.(((..........))).)))...))))))).)))))).. ( -21.80)
>DroSec_CAF1 1915 112 + 1
ACAUUAAAUGAUUUUAUUUUGUAGUGAAAACAGCAAGGUUCCAUUGCUAAUUAUAAUGGUUUUGCAUGAUGUGUACUGUUGCAUAUGUACGCAUGUUCCAUUGCUAAUAAUA
.............(((((..((((((..(((.(((((...((((((.......)))))).)))))...((((((((..........))))))))))).)))))).))))).. ( -24.90)
>DroSim_CAF1 1917 112 + 1
ACAUUAAAUGAUUUUAUUUUGUAGUGGAAACAGCAAGGUUCUAUUGCUAAUUAUAAUGGUUUUGUAUGAUGUGUACUAUUGCAUAUGUACGCAUGUUCCAUUGCUAAUAAUA
.............(((((..(((((((((..(((((.......)))))....................((((((((..........)))))))).))))))))).))))).. ( -25.70)
>consensus
ACAUUAAAUGAUUUUAUUUUGUAGUGGAAACAGCAAGGUUCCAUUGCUAAUUAUAAUGGUUUUG_AUGAUGUGUACUAUUGCAUAUGUACGCAUGUUCCAUUGCUAAUAAUA
.............(((((..(((((((((..(((((.......)))))....................((((((((..........)))))))).))))))))).))))).. (-21.03 = -21.37 +   0.34)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:27:07 2006