| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 17,465,219 – 17,465,309 |
| Length | 90 |
| Max. P | 0.751584 |
| Location | 17,465,219 – 17,465,309 |
|---|---|
| Length | 90 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 54.24 |
| Mean single sequence MFE | -27.27 |
| Consensus MFE | -12.10 |
| Energy contribution | -12.33 |
| Covariance contribution | 0.23 |
| Combinations/Pair | 1.41 |
| Mean z-score | -1.50 |
| Structure conservation index | 0.44 |
| SVM decision value | 0.48 |
| SVM RNA-class probability | 0.751584 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 17465219 90 - 22224390 CAGUCCAGGAAUUCCGAAAAGAGCAAGCCUUAAAAAAAGAGGCAGAUAAGGAGCUAGCCUCAGUGGACGACCAACUGGACCAGUCG-GA--UC--------------------------- ..(((((((....)).......................(((((((........)).)))))..)))))..((.((((...)))).)-).--..--------------------------- ( -23.20) >DroEre_CAF1 15569 90 - 1 UAGUCCAGGAAUUCCGCAAACAACAAGCCUCAAAAGAAGAGGCCGAGAAGGAACUAGCCUCAGUGGAGGAACUACUGGGCCAGUCG-GA--UC--------------------------- ..((((.((....))...........(((((.......))))).......((.((.(((.((((((.....))))))))).)))))-))--).--------------------------- ( -28.20) >DroAna_CAF1 9649 120 - 1 UAGUGCAACAAUUUCGUCACCUACAAAUCGCCACUGAGGAGGCUAAGGAGGAGCUGGCGGCUGCCGAGAAGAAAUUCGGAGAGUUCCUAUAUCUGAAGAACGAGAAAAUGAAUUGGCACA ..((((..((.(((((((.(((.((.........))))).))).....((((((((((....)))..(((....)))....)))))))...............)))).)).....)))). ( -30.40) >consensus UAGUCCAGGAAUUCCGAAAACAACAAGCCUCAAAAGAAGAGGCAGAGAAGGAGCUAGCCUCAGUGGAGGAACAACUGGGCCAGUCG_GA__UC___________________________ ..((((((...((((...........(((((.......)))))..............((.....)).))))...))))))........................................ (-12.10 = -12.33 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:27:06 2006