Locus 6973

Sequence ID X_DroMel_CAF1
Location 17,462,289 – 17,462,397
Length 108
Max. P 0.568391
window11389

overview

Window 9

Location 17,462,289 – 17,462,397
Length 108
Sequences 6
Columns 112
Reading direction reverse
Mean pairwise identity 84.63
Mean single sequence MFE -32.30
Consensus MFE -24.44
Energy contribution -24.00
Covariance contribution -0.44
Combinations/Pair 1.35
Mean z-score -1.89
Structure conservation index 0.76
SVM decision value 0.07
SVM RNA-class probability 0.568391
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17462289 108 - 22224390
CGGAAAGAUCUGCCCUUGGCUACGAGGUCAAUGCUUGAAACCGAGCGCAGCAAAAUGGUUCAGCUAUACCGUCAGCUCAAAAACAAGACAACAGCAGAUUCCUAA----CAG
.(((...((((((.((((....))))(((...(((((....)))))(.(((...(((((........)))))..))))........)))....)))))))))...----... ( -29.70)
>DroSec_CAF1 4523 108 - 1
CGGAAGGAUCUGCCCUUGGCCACGAGGUCAAUGCUCGAAACCGAGCGCAGCAAAAUGGUUCAGCUAUACCGUCAGCUCAAAAACAAGACAACAGCAGAUUCCUAA----CAG
.(..(((((((((.((((....))))(((...(((((....)))))(.(((...(((((........)))))..))))........)))....))))).))))..----).. ( -34.70)
>DroSim_CAF1 4608 108 - 1
CGGAAGGAUCUGCCCUUGGCCACGAGGUCAAUGCUCGAAACCGAGCGCAGUAAAAUGGUUCAGCUAUACCGUCAGCUCAAAAACAAGACAACAGCAGAUUCCUAA----CAG
.(..(((((((((.((((....))))(((...(((((....)))))(.(((...(((((........)))))..))))........)))....))))).))))..----).. ( -33.10)
>DroEre_CAF1 12531 108 - 1
CGGAAGGACUUGCCCUUGGCCACAAGGUCCAUGCUCGAAACCGAGCGCAGCAAAAUGGUUCAGCUGUACCGUCAGCUAAAAAACAAGACGACAGCGGAUGCCUGA----CAG
.(..(((..(((((((((....))))).....(((((....)))))...))))....((((.(((((..((((.............))))))))))))).)))..----).. ( -33.82)
>DroYak_CAF1 4655 108 - 1
CGGAAGGAUUUGCCCUUGGCCACAAGGUCCAUGCUCGAAACCGAGCGCAGCAAGAUGGUUCAGUUAUAUCGUCAGCUCAAAAACAAAACGACGGCGGAUUCUUGA----CAA
...(((((((((((((((....))))(((...(((((....)))))(.(((..((((((........)))))).))))...........))))))))))))))..----... ( -35.10)
>DroAna_CAF1 5765 112 - 1
CGCAAGGACCUCCCGGCGGCUACACGUUCCAUGCUUGAGACCGAGCGCAACAAGAUGGUUCUAUUGUACCGUCAGUUGAAGAAUAAAACAGCAGCAGAUCCUUAAGAUACAG
...(((((..((...((.(((....((((...(((((....))))).((((..((((((.(....).)))))).))))..)))).....))).)).)))))))......... ( -27.40)
>consensus
CGGAAGGAUCUGCCCUUGGCCACAAGGUCAAUGCUCGAAACCGAGCGCAGCAAAAUGGUUCAGCUAUACCGUCAGCUCAAAAACAAGACAACAGCAGAUUCCUAA____CAG
.....(((((((((((((....))))).....(((((....)))))..(((...(((((........)))))..)))................))))))))........... (-24.44 = -24.00 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:27:03 2006