Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 17,460,012 – 17,460,111 |
Length | 99 |
Max. P | 0.590796 |
Location | 17,460,012 – 17,460,111 |
---|---|
Length | 99 |
Sequences | 5 |
Columns | 100 |
Reading direction | forward |
Mean pairwise identity | 86.22 |
Mean single sequence MFE | -20.02 |
Consensus MFE | -12.96 |
Energy contribution | -13.64 |
Covariance contribution | 0.68 |
Combinations/Pair | 1.21 |
Mean z-score | -2.07 |
Structure conservation index | 0.65 |
SVM decision value | 0.11 |
SVM RNA-class probability | 0.590796 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 17460012 99 + 22224390 GCCGUAAA-AGGUAUCAUGAUUUGGUUACUAUUUCAAUUACUUUAUAAUCACUGUAUGCCAAUGCAGUGAAAAGGCACGAACACAAAAAAGAACAACAAA (((....(-(((((...(((..(((...)))..)))..))))))....(((((((((....)))))))))...)))........................ ( -23.50) >DroSec_CAF1 2312 99 + 1 GCCGUAAA-AGGUAUCAUGAUUUGGUUACUAUUUCAAUUACUUUAUAAUCACUGUAUGCCAAUGCGGUGAAAAGGCACGAACACAAAAAUUAACAACAGA (((....(-(((((...(((..(((...)))..)))..))))))....(((((((((....)))))))))...)))........................ ( -22.80) >DroSim_CAF1 2430 99 + 1 GCCGUAAA-AGGUAUCAUGAUUUGGUUACUAUUUCAAUUACUUUAUAAUCACUGUAUGCCAAUGCGGUGAAAAGGCACGAACACAAAAAUGUACAACCGA (((....(-(((((...(((..(((...)))..)))..))))))....(((((((((....)))))))))...)))........................ ( -22.80) >DroEre_CAF1 10316 97 + 1 GCCGUAAU-AGGUAUCGUGAAUUGGUUACUAUUUCAAUUACUUUAUAUUCACGGUAUGUCAAUGUGGUAAAA--GCACAAACACGAAAAGAAACUACAAU ..(((...-..(((((((((((.(((.............)))....))))))))))).....((((......--.))))...)))............... ( -16.72) >DroYak_CAF1 2430 100 + 1 GCCGUAAAAAGACAUCCAAAUUUUGUUGCUACUUCAAUUACUUUAUAAUCACUGUAUGCCAAUGCGGUAAAAAGGCACAAGCACAAAACAAAACAACAAA ((((((....((((.........))))..)))..................(((((((....))))))).....)))........................ ( -14.30) >consensus GCCGUAAA_AGGUAUCAUGAUUUGGUUACUAUUUCAAUUACUUUAUAAUCACUGUAUGCCAAUGCGGUGAAAAGGCACGAACACAAAAAAAAACAACAAA (((.......(((((((.....))).))))..................(((((((((....)))))))))...)))........................ (-12.96 = -13.64 + 0.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:27:00 2006