Locus 6969

Sequence ID X_DroMel_CAF1
Location 17,453,922 – 17,454,027
Length 105
Max. P 0.702625
window11383

overview

Window 3

Location 17,453,922 – 17,454,027
Length 105
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 85.51
Mean single sequence MFE -17.32
Consensus MFE -13.33
Energy contribution -12.67
Covariance contribution -0.66
Combinations/Pair 1.12
Mean z-score -2.04
Structure conservation index 0.77
SVM decision value 0.36
SVM RNA-class probability 0.702625
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17453922 105 - 22224390
UGCUUAUCGAAAACUCAACCAAAACACGCACAUGCGUUCGCUUUAAUCCAAAUUCAAUUCACUUUGUUCGGCCAACUUAUAGCAACUCUCGACCGGCAACAAUAC---------------
((((..((((...............((((....))))..(((.(((.((.....(((......)))...)).....))).))).....))))..)))).......--------------- ( -15.40)
>DroSec_CAF1 19103 105 - 1
UGCUUAUCGAAAACUCAACCAAAACACGCACAUGCGUUCGCUUUAAUCCAAAUUCAAUUCACUUUGUUCAACCAACUUAUAGCAACUCUCGACCGGCAACAAUUC---------------
((((..((((...............((((....))))..(((.(((........(((......)))..........))).))).....))))..)))).......--------------- ( -15.27)
>DroYak_CAF1 18600 120 - 1
UGCUUAUCGAAAACUCAAGCGAAACACGCACAUGCGUUCGCUUUAAUCCAAAUUCAAUUCACUUUGUGCGGCCUCCUUAUCACAACUCUCGACCGGCAACAAUUCCUUACAACAAUUCCU
((((..((((......((((((...((((....))))))))))....................(((((.((...))....)))))...))))..))))...................... ( -21.30)
>consensus
UGCUUAUCGAAAACUCAACCAAAACACGCACAUGCGUUCGCUUUAAUCCAAAUUCAAUUCACUUUGUUCGGCCAACUUAUAGCAACUCUCGACCGGCAACAAUUC_______________
((((..((((...............((((....))))..........................(((((............)))))...))))..))))...................... (-13.33 = -12.67 +  -0.66)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:26:58 2006