Locus 6968

Sequence ID X_DroMel_CAF1
Location 17,452,128 – 17,452,245
Length 117
Max. P 0.955775
window11382

overview

Window 2

Location 17,452,128 – 17,452,245
Length 117
Sequences 3
Columns 119
Reading direction forward
Mean pairwise identity 96.62
Mean single sequence MFE -32.04
Consensus MFE -29.50
Energy contribution -29.83
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -2.79
Structure conservation index 0.92
SVM decision value 1.46
SVM RNA-class probability 0.955775
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17452128 117 + 22224390
AUCCGUCGAAAAUCUGCAACAUUUAAUGGCAUGUAGAAGACGAUGAUGGGUCAGCAGUGGCACAAAUAAUAAAAACAACGAAA--AGAGCUGGCCGAAAGGCAAUUUGGCCAUUCGCAU
((((((((....((((((.(((...)))...))))))......))))))))..((((((((.(((((........((.(....--...).))(((....))).))))))))))).)).. ( -34.20)
>DroSec_CAF1 17393 117 + 1
AUCCGUCGAAAAUCUGCAACAUUUAAUGGCAUGUAGAAGACGAUGAUGGGUCAGCAGUGGCACAAAUAAUAAAAACAACGAAA--AGAGCUGGCCGAAAGGCAAUUUGGCCAUUCGCAU
((((((((....((((((.(((...)))...))))))......))))))))..((((((((.(((((........((.(....--...).))(((....))).))))))))))).)).. ( -34.20)
>DroYak_CAF1 16780 119 + 1
AUCCGUCUAAAAUCUGCAACAUUUAAUGGCAUGUAGAAGACGAUGAUGGGUCAGCAGUGGCACAAAUAAUAAAAACAACGAAAACAGAGCUGGCCAAAAGGCAAUUUAGCCAUUCGCUU
...(((((....((((((.(((...)))...)))))))))))......(((((((..((.........................))..)))))))....(((......)))........ ( -27.71)
>consensus
AUCCGUCGAAAAUCUGCAACAUUUAAUGGCAUGUAGAAGACGAUGAUGGGUCAGCAGUGGCACAAAUAAUAAAAACAACGAAA__AGAGCUGGCCGAAAGGCAAUUUGGCCAUUCGCAU
(((((((.....((((((.(((...)))...)))))).......)))))))..((((((((.(((((........((.(.........).))(((....))).))))))))))).)).. (-29.50 = -29.83 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:26:57 2006