Locus 6967

Sequence ID	X_DroMel_CAF1
Location	17,451,309 – 17,451,417
Length	108
Max. P	0.944583

overview

Window 0

Location	17,451,309 – 17,451,417
Length	108
Sequences	3
Columns	108
Reading direction	forward
Mean pairwise identity	98.15
Mean single sequence MFE	-38.73
Consensus MFE	-38.29
Energy contribution	-38.40
Covariance contribution	0.11
Combinations/Pair	1.03
Mean z-score	-2.22
Structure conservation index	0.99
SVM decision value	1.35
SVM RNA-class probability	0.944583
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17451309 108 + 22224390
CUUUUUGGACGCUCCUCAUUAAUGUGCGCCGUGUGCGCUGCAAAUUAGGCACGCAAAGCGUUGCCAUUAAAAAGGAGCACAAAGGAUCCGCGCAGGAGGAAGGCGCAA
.((((((...((((((..((((((.(((.(((.((((.(((.......)))))))..))).)))))))))..)))))).))))))....((((.........)))).. ( -39.50)
>DroSec_CAF1 16687 108 + 1
CUUUUUGGACGCUCCUCAUUAAUGUGCGCCGUGUGCGCUGCAAAUUAGGCACGCAAAGCGUUGCCAUUAAAAAGGAGCACAAAGGAUCCGCGCAGGAGGAAGGCGCAA
.((((((...((((((..((((((.(((.(((.((((.(((.......)))))))..))).)))))))))..)))))).))))))....((((.........)))).. ( -39.50)
>DroYak_CAF1 15905 108 + 1
CUUUUUGGACUCUCCUCAUUAAUGUGCGCCGUGUGCGCUGCAAAUUAGGCACGCAAAGCGCUGCCAUUAAAAAGGAGCACAAAGGAUCCGCGCAGGAGGCAGGCGCAA
.((((((....(((((..((((((.((((..((((.(((........))).))))..))))...))))))..)))))..))))))....((((.........)))).. ( -37.20)
>consensus
CUUUUUGGACGCUCCUCAUUAAUGUGCGCCGUGUGCGCUGCAAAUUAGGCACGCAAAGCGUUGCCAUUAAAAAGGAGCACAAAGGAUCCGCGCAGGAGGAAGGCGCAA
.((((((...((((((..((((((.((((..((((.(((........))).))))..))))...))))))..)))))).))))))....((((.........)))).. (-38.29 = -38.40 +   0.11)

alignment

secondary structure

dotplot

Window 1

Location	17,451,309 – 17,451,417
Length	108
Sequences	3
Columns	108
Reading direction	reverse
Mean pairwise identity	98.15
Mean single sequence MFE	-37.64
Consensus MFE	-36.16
Energy contribution	-36.28
Covariance contribution	0.11
Combinations/Pair	1.03
Mean z-score	-2.14
Structure conservation index	0.96
SVM decision value	1.00
SVM RNA-class probability	0.898334
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17451309 108 - 22224390
UUGCGCCUUCCUCCUGCGCGGAUCCUUUGUGCUCCUUUUUAAUGGCAACGCUUUGCGUGCCUAAUUUGCAGCGCACACGGCGCACAUUAAUGAGGAGCGUCCAAAAAG
..((((.........))))((((.......(((((((.(((((((((.(((...))))))).........((((.....))))..))))).)))))))))))...... ( -37.71)
>DroSec_CAF1 16687 108 - 1
UUGCGCCUUCCUCCUGCGCGGAUCCUUUGUGCUCCUUUUUAAUGGCAACGCUUUGCGUGCCUAAUUUGCAGCGCACACGGCGCACAUUAAUGAGGAGCGUCCAAAAAG
..((((.........))))((((.......(((((((.(((((((((.(((...))))))).........((((.....))))..))))).)))))))))))...... ( -37.71)
>DroYak_CAF1 15905 108 - 1
UUGCGCCUGCCUCCUGCGCGGAUCCUUUGUGCUCCUUUUUAAUGGCAGCGCUUUGCGUGCCUAAUUUGCAGCGCACACGGCGCACAUUAAUGAGGAGAGUCCAAAAAG
..((((.........))))((((........((((((.((((((...(((((.((.((((..........)))).)).))))).)))))).)))))).))))...... ( -37.50)
>consensus
UUGCGCCUUCCUCCUGCGCGGAUCCUUUGUGCUCCUUUUUAAUGGCAACGCUUUGCGUGCCUAAUUUGCAGCGCACACGGCGCACAUUAAUGAGGAGCGUCCAAAAAG
..((((.........))))((((.......(((((((.((((((((.((((...))))))).........((((.....))))..))))).)))))))))))...... (-36.16 = -36.28 +   0.11)

alignment

secondary structure

dotplot

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:26:56 2006