Locus 6966

Sequence ID X_DroMel_CAF1
Location 17,450,343 – 17,450,434
Length 91
Max. P 0.779347
window11379

overview

Window 9

Location 17,450,343 – 17,450,434
Length 91
Sequences 3
Columns 91
Reading direction reverse
Mean pairwise identity 97.07
Mean single sequence MFE -18.97
Consensus MFE -16.85
Energy contribution -16.63
Covariance contribution -0.22
Combinations/Pair 1.05
Mean z-score -2.24
Structure conservation index 0.89
SVM decision value 0.55
SVM RNA-class probability 0.779347
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17450343 91 - 22224390
ACACACGCAUGAAAUUAAUUACGAAAUGCGUGGGCGAGUGUGCAGAAACGUUUAGAGCAAUUUAAUGCCUGUAAAUAAAACAAAUUGCAAA
...(((((((...............))))))).((((...(((((...((((.(((....))))))).)))))...........))))... ( -17.40)
>DroSec_CAF1 15698 91 - 1
ACACACGCAUGAAAUUAAUUACGAAAUGCGUGGGCGAAUGUGCAAAAACGUUUACAGCAAUUUAAUGCCUGUAAAUAAAACAAAUUGCAAA
...(((((((...............))))))).((((..((......))((((((((((......)).))))))))........))))... ( -21.26)
>DroYak_CAF1 15151 91 - 1
AUACACGCAUGAAAUUAAUUACGAAAUGCGUGGGCGAAUGUGCAGAAACGUUUAGAGCAAUUUAAUGCCUGUAAAUAAAACAAAUUGCAAA
...(((((((...............)))))))(((((((((......))))))(((....)))...)))(((((..........))))).. ( -18.26)
>consensus
ACACACGCAUGAAAUUAAUUACGAAAUGCGUGGGCGAAUGUGCAGAAACGUUUAGAGCAAUUUAAUGCCUGUAAAUAAAACAAAUUGCAAA
...(((((((...............)))))))...((((((......))))))...(((((((..................)))))))... (-16.85 = -16.63 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:26:54 2006