Locus 6965

Sequence ID X_DroMel_CAF1
Location 17,449,001 – 17,449,120
Length 119
Max. P 0.641218
window11378

overview

Window 8

Location 17,449,001 – 17,449,120
Length 119
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 81.34
Mean single sequence MFE -36.97
Consensus MFE -29.17
Energy contribution -30.40
Covariance contribution 1.23
Combinations/Pair 1.15
Mean z-score -1.52
Structure conservation index 0.79
SVM decision value 0.22
SVM RNA-class probability 0.641218
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17449001 119 + 22224390
GGAUGCGUGAUGCACUUGCAUUG-GAUUGCUUGCGAUACUUUUUCCAUUCCAUUUGUUUGGUGAACGGUUGUUGUCACUACAAGGGACUGCCUCAAUUGAAAAGGUGUUGGGCAAAAGGC
....((..(((((....))))).-..(((((..((((((((((((((.(((.(((((..(((((.((.....))))))))))))))).))........)))))))))))))))))...)) ( -30.60)
>DroSec_CAF1 14350 119 + 1
GGAUGCGUGAUGCACUUGCAUCG-GAUUGCCUGUGACACUUUUUCCAUUCCAUUUGUUUGGUGAACGGUUGUUGUCACUGAAAGGGACUACCUCAAUGGAAAAGGUGUUGGGCAACAGGC
....((.((((((....))))))-..((((((..((((((((((((((((((......))).....(((....(((.((....))))).)))..)))))))))))))))))))))...)) ( -43.80)
>DroYak_CAF1 13931 103 + 1
GGAUGCGUGAUGCACUUGCAUCGCGAUGCCCCGUGACACUUUUUCCAUUCCAUUUGCUUGG----------UUGUCGCUAAAAGGGACUACCUCAAUGCAAGAGGUGUUGGGC-------
.....((((((((....))))))))..((((...((((((((((.((((..........((----------(.(((.(.....).))).)))..)))).))))))))))))))------- ( -36.50)
>consensus
GGAUGCGUGAUGCACUUGCAUCG_GAUUGCCUGUGACACUUUUUCCAUUCCAUUUGUUUGGUGAACGGUUGUUGUCACUAAAAGGGACUACCUCAAUGGAAAAGGUGUUGGGCAA_AGGC
........(((((....)))))....((((((..((((((((((((((((((......)))............(((.((....)))))......)))))))))))))))))))))..... (-29.17 = -30.40 +   1.23)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:26:53 2006