Locus 6964

Sequence ID X_DroMel_CAF1
Location 17,446,104 – 17,446,196
Length 92
Max. P 0.651328
window11377

overview

Window 7

Location 17,446,104 – 17,446,196
Length 92
Sequences 4
Columns 95
Reading direction forward
Mean pairwise identity 89.48
Mean single sequence MFE -17.10
Consensus MFE -12.30
Energy contribution -12.93
Covariance contribution 0.62
Combinations/Pair 1.06
Mean z-score -1.84
Structure conservation index 0.72
SVM decision value 0.25
SVM RNA-class probability 0.651328
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17446104 92 + 22224390
GUAGAU--AAAAAAAAAAAAACAAAGAAGUGACCACAUUAGAGGCGCUUUUGCAGCCAAUUGCUGCUGGAAAAUGGAGAAAAUCACUGAAAACA-
...(((--................(((((((.((........)))))))))(((((.....)))))...............)))..........- ( -16.80)
>DroSec_CAF1 11496 92 + 1
GUAGAU--AAAGAAAAAAAAACAAAGAAGUGACCACAUUAGAGGCGCUUUUGCAGCCAAUUGCUGCUAGAAAAUGGAGAAAAUCACUGAAAACA-
...(((--................(((((((.((........)))))))))(((((.....)))))...............)))..........- ( -16.80)
>DroEre_CAF1 10577 94 + 1
GUAGAUUUGAAAAACGAAAAUCACAGAAGUGACCACAUUAGAGGAGCUUUUGCAGUCAAUUGCUGCUGGAAAAUGGGGAAAAUCACUGAAAAGA-
...(((((............((((....))))(((..((..((.(((..(((....)))..))).))..))..)))...))))).((....)).- ( -17.90)
>DroYak_CAF1 10957 90 + 1
GUAGAU-----AAAAAAAAAUCACAGAAGUGACCACAUUAGAGGCGCUUUUGCAAGCAAUUGCUGCUGGAAAAUGGCGAAAAUCACUGAAAACAA
...(((-----............((((((((.((........)))))))))).......(((((..(....)..)))))..)))........... ( -16.90)
>consensus
GUAGAU__AAAAAAAAAAAAACAAAGAAGUGACCACAUUAGAGGCGCUUUUGCAGCCAAUUGCUGCUGGAAAAUGGAGAAAAUCACUGAAAACA_
...(((..................(((((((.((........)))))))))(((((.....)))))...............)))........... (-12.30 = -12.93 +   0.62)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:26:52 2006