Locus 6963

Sequence ID X_DroMel_CAF1
Location 17,444,970 – 17,445,088
Length 118
Max. P 0.899345
window11376

overview

Window 6

Location 17,444,970 – 17,445,088
Length 118
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 93.42
Mean single sequence MFE -32.78
Consensus MFE -26.38
Energy contribution -25.87
Covariance contribution -0.50
Combinations/Pair 1.12
Mean z-score -2.66
Structure conservation index 0.80
SVM decision value 1.01
SVM RNA-class probability 0.899345
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17444970 118 + 22224390
CAUCAAGCGCUCUCAUCCUUCGUGACAAGCCAUUAUUCAACCCCU--UGCCGGGCAGUAAAAACUAGUACUUGUGUACAGUCUAUUAAAUCCUCAAGGAUAUGAAUAAUGCUGCUGAGCG
.......(((((((((.....))))..((((((((((((...(((--((..(((...(((..(((.((((....)))))))...)))...))))))))...)))))))))..)))))))) ( -32.10)
>DroSec_CAF1 10102 118 + 1
CAUCAAGCGCUCUCAUCCUUCGUGACAAGCCAUUAUUCAACCGCU--UGCCGGGCAGUAAAAACUAGUACUUGUGUACAGUCUAUUAAAUCCUCAAGGAUAUGAAUAAUGGUGCUGAGCG
.......(((((((((.....))))...(((((((((((......--....(((((((....))).((((....)))).)))).....((((....)))).)))))))))))...))))) ( -32.80)
>DroEre_CAF1 9470 118 + 1
CAUCAAGCGCUCUCAUCCUUAGUGACACGCCAUUAUUCAACCCCU--UGCAGGGCAGUAAAAACUAGUACUUGUGUACAGUCUAUUAAGUCCUCAAGGAUAUGAAUAAUGCUUCUGAGCG
.......(((((((((.....))))...((.((((((((...(((--((.(((((.......(((.((((....))))))).......))))))))))...))))))))))....))))) ( -35.54)
>DroYak_CAF1 9826 120 + 1
CAUCAAGCGCUUUCAUCCUUCAUGAGAAGCCAUUAUUCAACCCCUUUUGCAGGGCAGUAAAAACUAGUACUAGUUUGCAGUCUAUUAAAUCCUCAAGGAUAUGAAUAAUGCUUCUGAGCG
.......(((((((((.....))))(((((.((((((((.......(((((((..((((........))))..)))))))........((((....)))).))))))))))))).))))) ( -30.70)
>consensus
CAUCAAGCGCUCUCAUCCUUCGUGACAAGCCAUUAUUCAACCCCU__UGCAGGGCAGUAAAAACUAGUACUUGUGUACAGUCUAUUAAAUCCUCAAGGAUAUGAAUAAUGCUGCUGAGCG
.......(((((((((.....)))).....(((((((((............(((((((....))).((((....)))).)))).....((((....)))).))))))))).....))))) (-26.38 = -25.87 +  -0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:26:51 2006