Locus 6961

Sequence ID X_DroMel_CAF1
Location 17,442,433 – 17,442,551
Length 118
Max. P 0.565682
window11371

overview

Window 1

Location 17,442,433 – 17,442,551
Length 118
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 83.24
Mean single sequence MFE -33.38
Consensus MFE -21.00
Energy contribution -23.12
Covariance contribution 2.12
Combinations/Pair 1.16
Mean z-score -1.75
Structure conservation index 0.63
SVM decision value 0.06
SVM RNA-class probability 0.565682
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17442433 118 + 22224390
GUGGUUUGGCUUUUGGCUCUUUAUUGGCAUUGUUGGCUUUAUUGUCGCUGAAAAUUAAGUGACACGAGGAACGGAGGAGUCCUGUCGCUGGGACAAUGCAUUUU--UUUGUUUGCCCAUU
.......(((....((((((((.(..((...))..)((((..(((((((........))))))).))))....))))))))..)))..((((.(((.(((....--..)))))))))).. ( -30.60)
>DroSec_CAF1 7538 120 + 1
GUGGCUUAUCUUUUGGCUCUUUAUUGCCAUUGUUGGCUUUAUUGUCGCUGGAAAUUAAGUGACACGAGGAACGAAGGAGUCCUGUCGCUGGGACAAUGCAUUUUUUUUUGUUUGCCCAUU
(((((...(((((((..(((((...((((....)))).....(((((((........))))))).))))).))))))).....)))))((((.(((.(((........)))))))))).. ( -39.10)
>DroEre_CAF1 7348 101 + 1
GUGGUUUGUCUUUUGCCUUUU-------AUUACUGGCUCU-UUGUCACUGGAAAUGAAGUGACACCAGGAACG---GAGUCCUGUCGCUGGGACAAUGCAUUUU--------UGCCCAUU
((((.(((((....(((....-------......)))...-.(((((((........)))))))((((..(((---(....))))..))))))))).(((....--------))))))). ( -30.70)
>DroYak_CAF1 7458 108 + 1
GUGGUUUGCCUGUUGGCUUUUUAUUGCCAUUGUUGGCUUU-UUGUCGCUGGAAAUUAAGUGACACGCGAAACG---GAGUCCUGUCGCUGGGACAAUGCAUUUU--------UGCCCAUU
(((....(((...((((........)))).....)))...-.(((((((........)))))))))).....(---(.(((((......)))))...(((....--------)))))... ( -33.10)
>consensus
GUGGUUUGUCUUUUGGCUCUUUAUUGCCAUUGUUGGCUUU_UUGUCGCUGGAAAUUAAGUGACACGAGGAACG___GAGUCCUGUCGCUGGGACAAUGCAUUUU________UGCCCAUU
(.(((....((((((..(((((...((((....)))).....(((((((........))))))).))))).)))))).(((((......)))))...................))))... (-21.00 = -23.12 +   2.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:26:47 2006