Locus 6960

Sequence ID X_DroMel_CAF1
Location 17,436,306 – 17,436,410
Length 104
Max. P 0.533272
window11370

overview

Window 0

Location 17,436,306 – 17,436,410
Length 104
Sequences 6
Columns 107
Reading direction forward
Mean pairwise identity 82.99
Mean single sequence MFE -36.70
Consensus MFE -25.07
Energy contribution -25.60
Covariance contribution 0.53
Combinations/Pair 1.33
Mean z-score -1.66
Structure conservation index 0.68
SVM decision value -0.00
SVM RNA-class probability 0.533272
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17436306 104 + 22224390
---GGAUUUUGGUAAACUGUAUACGAGCAUGCCUGUCCUAGAAGAUGGCCUGAGCAGUGGCCACGCCUCCGACACGGAGAACAACGUAUCCGUGGUGUGUGACAAGC
---((((...((((...(((......))))))).))))........((((........))))(((((.(.((.(((........))).)).).)))))......... ( -28.60)
>DroVir_CAF1 1863 107 + 1
AACCGACUAUGGUAAGCUCUAUACAAGUAUGCCGGUGCUGGAGGAUGGACUCAGCAGUGGCCAUGCCUCCGAUACAGAAAACAAUGUAUCCGUCGUCUGCGACAAGC
.(((......)))..(((........((((((((.(((((.((......))))))).))).)))))....((((((........)))))).((((....)))).))) ( -33.40)
>DroPse_CAF1 1635 104 + 1
---AGACUACGGCAAGCUGUACACGAGCAUGCCCGUGCUGGAGGAUGGCCUCAGCAGUGGCCAUGCCUCCGAUACGGAGAACAAUGUAUCUGUUGUCUGUGACAAGC
---.....((((((.(((.......))).)).))))((((((((((((((........)))))).)))))(.((((((.((((.......)))).)))))).).))) ( -41.80)
>DroWil_CAF1 94079 104 + 1
---AGAUUAUGGCAAACUCUAUACGAGCAUGCCAGUUCUAGAGGAUGGCCUAAGUAGUGGUCAUGCCUCGGAUACGGAGAAUAAUGCAUCUGUUGUCUGCGACAAGC
---(((...(((((..(((.....)))..)))))..))).((((((((((........)))))).))))(((((((((..........)))).)))))......... ( -33.60)
>DroMoj_CAF1 2209 106 + 1
AACCGACUAUGGCAAGCUCUACACCAGCAUGCCGGUGCUGGAGGAUGGUCUCAGCAGUGGCCAUGCUUCGGACACCGAGAACAAUGUCUCUGUCGUCUGCGACAAG-
..........((((.(((.......))).))))((((((((((.((((((........)))))).)))))).))))((((......))))(((((....)))))..- ( -44.00)
>DroPer_CAF1 1670 104 + 1
---AGACUACGGCAAGCUGUACACGAGCAUGCCCGUGCUGGAGGACGGCCUCAGCAGUGGCCAUGCCUCCGAUACGGAGAACAAUGUAUCUGUUGUCUGUGACAAGC
---.....((((((.(((.......))).)).))))((((((((..((((........))))...)))))(.((((((.((((.......)))).)))))).).))) ( -38.80)
>consensus
___AGACUAUGGCAAGCUCUACACGAGCAUGCCCGUGCUGGAGGAUGGCCUCAGCAGUGGCCAUGCCUCCGAUACGGAGAACAAUGUAUCUGUUGUCUGCGACAAGC
..........((((.(((.......))).)))).......((((((((((........)))))).)))).((((((........)))))).((((....)))).... (-25.07 = -25.60 +   0.53)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:26:46 2006