Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,923,765 – 1,923,925 |
Length | 160 |
Max. P | 0.881532 |
Location | 1,923,765 – 1,923,885 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 85.00 |
Mean single sequence MFE | -44.73 |
Consensus MFE | -37.44 |
Energy contribution | -38.50 |
Covariance contribution | 1.06 |
Combinations/Pair | 1.06 |
Mean z-score | -1.71 |
Structure conservation index | 0.84 |
SVM decision value | 0.55 |
SVM RNA-class probability | 0.778599 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1923765 120 + 22224390 ACACCGGGAAUAGGCGGCCGGAAGGCGGAGCAGCCUGUGGCCAGGUAGAUUUUAUCGUACUUCACCACGUAGCCAUUGCUGCAGUGCAGCUCUUUCUGAGCGGUAUCCAACUUCUCGGCG ...(((((((......(((....)))((((((((..(((((..(((.((............))))).....))))).)))))..(((.((((.....)))).))))))...))))))).. ( -46.40) >DroSec_CAF1 7735 120 + 1 NNNNNNNNNNNNNNNNNNNCGGAGGCGGAGCAGCCUGUGGCCAGGUAGAUUUUAUCGUACUUCACCACGUAGCCAUUGCUGCAGUGCAGCUCCUUCUGAGCGGUAUCCAACUUCUCGGCG ..........................(((((.((((((((..((((((((...))).)))))..))))(((((....))))))).)).)))))..(((((.(((.....))).))))).. ( -34.50) >DroEre_CAF1 7803 120 + 1 ACACCCGGAAUUGGCGGCCGGAAGGCGGAGCAGCCUGUGGCAAGGUAGAUUUUGUCGUACUUCACCACAUAGCCAUUGCUGCAGUGCAGCUCCUUCUGAGCUGUAUCCAGUUUCUCGGCG ...((.(((((((((.(((....))).).(((((..(((((..(((.((............))))).....))))).))))).(((((((((.....)))))))))))))))))..)).. ( -47.90) >DroYak_CAF1 7839 120 + 1 ACACCCGGAAUAGGCGGCCGGAAGGCGGAGCAGCCGGUGGCCAGGUAGAUUAUGUAUUAAUUCACCACAUAGCCAUUGCUGCAGUGCAGCUCCUUCUGAGCUGUAUCCAGUUUCUCGGCG ...(((......)).)((((..((((((((((((.((((((..(((..((((.....))))..))).....)))))))))))..((((((((.....))))))))))).))))..)))). ( -50.10) >consensus ACACCCGGAAUAGGCGGCCGGAAGGCGGAGCAGCCUGUGGCCAGGUAGAUUUUAUCGUACUUCACCACAUAGCCAUUGCUGCAGUGCAGCUCCUUCUGAGCGGUAUCCAACUUCUCGGCG ................((((((((..((((((((..(((((..(((.((............))))).....))))).)))))..((((((((.....)))))))))))..)))).)))). (-37.44 = -38.50 + 1.06)
Location | 1,923,765 – 1,923,885 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 85.00 |
Mean single sequence MFE | -43.02 |
Consensus MFE | -36.31 |
Energy contribution | -39.06 |
Covariance contribution | 2.75 |
Combinations/Pair | 1.00 |
Mean z-score | -1.90 |
Structure conservation index | 0.84 |
SVM decision value | 0.92 |
SVM RNA-class probability | 0.881532 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1923765 120 - 22224390 CGCCGAGAAGUUGGAUACCGCUCAGAAAGAGCUGCACUGCAGCAAUGGCUACGUGGUGAAGUACGAUAAAAUCUACCUGGCCACAGGCUGCUCCGCCUUCCGGCCGCCUAUUCCCGGUGU .((((.((((.((((....((((.....))))......(((((..((((((.((((................)))).))))))...))))))))).))))))))((((.......)))). ( -46.49) >DroSec_CAF1 7735 120 - 1 CGCCGAGAAGUUGGAUACCGCUCAGAAGGAGCUGCACUGCAGCAAUGGCUACGUGGUGAAGUACGAUAAAAUCUACCUGGCCACAGGCUGCUCCGCCUCCGNNNNNNNNNNNNNNNNNNN ....(((..((.....))..)))....((((..((...(((((..((((((.((((................)))).))))))...)))))...)))))).................... ( -31.89) >DroEre_CAF1 7803 120 - 1 CGCCGAGAAACUGGAUACAGCUCAGAAGGAGCUGCACUGCAGCAAUGGCUAUGUGGUGAAGUACGACAAAAUCUACCUUGCCACAGGCUGCUCCGCCUUCCGGCCGCCAAUUCCGGGUGU .((((.(((..((((..((((((.....))))))....(((((........(((((..(.(((.((.....))))).)..))))).)))))))))..)))))))((((.......)))). ( -45.30) >DroYak_CAF1 7839 120 - 1 CGCCGAGAAACUGGAUACAGCUCAGAAGGAGCUGCACUGCAGCAAUGGCUAUGUGGUGAAUUAAUACAUAAUCUACCUGGCCACCGGCUGCUCCGCCUUCCGGCCGCCUAUUCCGGGUGU .((((.(((..((((..((((((.....))))))....(((((..((((((...((((.((((.....)))).))))))))))...)))))))))..)))))))(((((.....))))). ( -48.40) >consensus CGCCGAGAAACUGGAUACAGCUCAGAAGGAGCUGCACUGCAGCAAUGGCUACGUGGUGAAGUACGACAAAAUCUACCUGGCCACAGGCUGCUCCGCCUUCCGGCCGCCUAUUCCGGGUGU .((((.((((.((((..((((((.....))))))....(((((..((((((.((((................)))).))))))...))))))))).))))))))((((.......)))). (-36.31 = -39.06 + 2.75)
Location | 1,923,805 – 1,923,925 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 91.25 |
Mean single sequence MFE | -35.50 |
Consensus MFE | -27.67 |
Energy contribution | -29.55 |
Covariance contribution | 1.88 |
Combinations/Pair | 1.11 |
Mean z-score | -1.86 |
Structure conservation index | 0.78 |
SVM decision value | 0.41 |
SVM RNA-class probability | 0.727266 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1923805 120 + 22224390 CCAGGUAGAUUUUAUCGUACUUCACCACGUAGCCAUUGCUGCAGUGCAGCUCUUUCUGAGCGGUAUCCAACUUCUCGGCGGCGACUCCUUGCCACAGUUCGAUAUCGUACUCUUUGUAGA ...(((.((............)))))..(((((....)))))(((((.((((.....))))((((((.((((.....(.(((((....))))).))))).)))))))))))......... ( -33.70) >DroSec_CAF1 7775 120 + 1 CCAGGUAGAUUUUAUCGUACUUCACCACGUAGCCAUUGCUGCAGUGCAGCUCCUUCUGAGCGGUAUCCAACUUCUCGGCGGCGACUCCUUGCCACUGUUCAAUAUCGUACUCUUUGUAGA ...(((.((............)))))..(((((....)))))(((((.((((.....))))(((((..(((.....((.(((((....))))).)))))..))))))))))......... ( -28.90) >DroEre_CAF1 7843 120 + 1 CAAGGUAGAUUUUGUCGUACUUCACCACAUAGCCAUUGCUGCAGUGCAGCUCCUUCUGAGCUGUAUCCAGUUUCUCGGCGGCGACUCCUAGCCACAGUUCGAUAUCGUACGCCUUGUAAA ((((((..((..(((((.(((..........(((...((((..(((((((((.....))))))))).)))).....)))(((........)))..))).)))))..))..)))))).... ( -41.70) >DroYak_CAF1 7879 120 + 1 CCAGGUAGAUUAUGUAUUAAUUCACCACAUAGCCAUUGCUGCAGUGCAGCUCCUUCUGAGCUGUAUCCAGUUUCUCGGCGGCGACUCCUUGCCACAGUUCGAUAUCGUAUUCCUGGUAGA (((((.....((((((((.............(((...((((..(((((((((.....))))))))).)))).....)))(((((....))))).......)))).))))..))))).... ( -37.70) >consensus CCAGGUAGAUUUUAUCGUACUUCACCACAUAGCCAUUGCUGCAGUGCAGCUCCUUCUGAGCGGUAUCCAACUUCUCGGCGGCGACUCCUUGCCACAGUUCGAUAUCGUACUCCUUGUAGA (((((...((..(((((.((...........(((...((((..(((((((((.....))))))))).)))).....)))(((((....)))))...)).)))))..))...))))).... (-27.67 = -29.55 + 1.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:22 2006