Locus 6959

Sequence ID X_DroMel_CAF1
Location 17,431,929 – 17,432,041
Length 112
Max. P 0.772713
window11369

overview

Window 9

Location 17,431,929 – 17,432,041
Length 112
Sequences 6
Columns 117
Reading direction forward
Mean pairwise identity 76.34
Mean single sequence MFE -32.85
Consensus MFE -21.42
Energy contribution -20.73
Covariance contribution -0.69
Combinations/Pair 1.38
Mean z-score -1.40
Structure conservation index 0.65
SVM decision value 0.53
SVM RNA-class probability 0.772713
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17431929 112 + 22224390
UUUUUUU-UCCA--UUU--CCAGCGAACGUACUUCCUGGAUGCGGGUGCCAUUUCGGCGAUUUGCUUCACUGUCUUCGGCGUCUGCUGCACAGUGGGCACCAUUGGGAUCGUACUGU
......(-((((--..(--((((.(((.....))))))))....((((((.....(((.....))).((((((...((((....)))).))))))))))))..)))))......... ( -36.90)
>DroVir_CAF1 30714 111 + 1
AUGG-UU-UUUG--AUU--AUAGCGCACCUAUUUUCUGGAUGCCGGCGCCAUCUCAGCCAUAUGCUUUACGGUCUUUGGUAUAUGCUGUACUGUGGGCACCAUUGGCAUUGUGCUGU
....-..-....--...--((((((((((........))(((((((.(((....((((.(((((((...........))))))))))).......))).))...))))))))))))) ( -34.50)
>DroGri_CAF1 32858 112 + 1
AUUA-UG-UAUA-UGUU--AUAGCGCACAUAUUUUUUGGAUGCCGGCUCCAUAUCGGCCAUAUGUUUCACUGUCUUUGGCAUUUGCUGUACGGUGGGCACCAUUGGCAUCGUCCUUU
....-..-.(((-(((.--.......))))))......((((((((((.......))))...((((.((((((...((((....)))).)))))))))).....))))))....... ( -29.30)
>DroWil_CAF1 16832 113 + 1
UUGU-GU-UUUA--UGCCCUUAGAGAACCUAUUUUCUGGAUGCUGGGGCCAUAUCAGCCAUUUGCUUUACAGUUUUUGGCAUUUGCUGCACAGUGGGCACCAUUGGCAUUGUCCUAU
....-..-....--.((..((((((((....))))))))..))((((((.......((((...(((....)))...))))......(((.((((((...)))))))))..)))))). ( -29.60)
>DroMoj_CAF1 31330 111 + 1
UUUG-UU-UCUG--CUU--GCAGCGCACCUAUUUCCUGGACGCUGGCGCCAUCUCGGCCAUUUGCUUCACGGUCUUUGGCAUCUGCUGCACGGUGGGCACCAUUGGCAUUGUGCUAU
...(-(.-((..--(((--(((((((.((........))..))....((((....((((...........))))..))))....)))))).))..)).))...((((.....)))). ( -31.70)
>DroAna_CAF1 11565 115 + 1
UCUAUCUUGUAAUCCUU--GUAGAGAACCUACUUCCUGGAUGCUGGUGCCAUUUCAGCGAUCUGCUUCACUGUAUUCGGUAUAUGCUGUACAGUGGGCACCAUUGGCAUCGUCCUGU
.................--((((.....))))......((((((((((((.....(((.....))).(((((((..((((....)))))))))))))))))...))))))....... ( -35.10)
>consensus
UUUA_UU_UUUA__CUU__AUAGCGAACCUAUUUCCUGGAUGCUGGCGCCAUAUCAGCCAUUUGCUUCACUGUCUUUGGCAUAUGCUGCACAGUGGGCACCAUUGGCAUCGUCCUGU
......................................((((((((.(((.....(((.....))).((((((...((((....)))).))))))))).))...))))))....... (-21.42 = -20.73 +  -0.69)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:26:45 2006