Locus 6957

Sequence ID X_DroMel_CAF1
Location 17,423,080 – 17,423,174
Length 94
Max. P 0.947116
window11366

overview

Window 6

Location 17,423,080 – 17,423,174
Length 94
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 70.61
Mean single sequence MFE -24.26
Consensus MFE -6.82
Energy contribution -7.96
Covariance contribution 1.14
Combinations/Pair 1.14
Mean z-score -2.13
Structure conservation index 0.28
SVM decision value 1.37
SVM RNA-class probability 0.947116
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17423080 94 + 22224390
AAGCAACAUCAACAUCUGCAAAUCAUAUGCAG---AGCGUCACUCGC-------AUAUGGAUAUGAGAUUUCAGAUU-UUCGUGACCAUAUCCGGUUGCCAGUCA---------------
..(((((.......((((((.......)))))---)(((.....)))-------((((((.(((((((........)-)))))).))))))...)))))......--------------- ( -28.30)
>DroSec_CAF1 16586 95 + 1
AACCAACAGCAA--UCUGCAAAUCAUAUGCAGAAGAGCCUCACUCGC-------AUAUGGAUAUGAGAUUUCAGAUU-UUCGUGACCAUAUCCGGUUGCCAGUCA---------------
((((....((..--((((((.......)))))).(((.....)))))-------((((((.(((((((........)-)))))).))))))..))))........--------------- ( -27.00)
>DroEre_CAF1 16519 97 + 1
AGCCAACAACAA--UCUGCAAAUCAUAUGCAG---AGCGUCACUCGC-------AUAUGGGAAUGAGAUUUCAGAUUUUUUGUGACCAUAUCCGGUUGCCAGUCAGCAG-----------
.((..((...((--(((.((..((((((((.(---((.....)))))-------))))))...)))))))...........(..(((......)))..)..))..))..----------- ( -25.30)
>DroYak_CAF1 16750 114 + 1
AGCCAACAACAA--UCUGCAAAUCAUAUGCAG---AGCGUCACUCGCAUAUCGCAUAUGGGAAUGAGAUUUCAGAUU-UUUGUGACCAUAUCCGGUUGCCAGUCGGCAGAGUCAUCAGAG
.(((....((..--((((((.......)))))---)..)).(((.(((.((((.((((((..(..(((........)-))..)..)))))).))))))).))).)))............. ( -33.10)
>DroAna_CAF1 17954 74 + 1
AAACAAA--AAA--ACAGAAAAUCACAUGCAG---A------------------AAAUGGGAAUGAAUUUUCAAAUU-UUUGCCUUCACAUCCA-----CAGU----AU-----------
.......--...--..............((((---(------------------((...((((.....))))...))-)))))...........-----....----..----------- (  -7.60)
>consensus
AACCAACAACAA__UCUGCAAAUCAUAUGCAG___AGCGUCACUCGC_______AUAUGGGAAUGAGAUUUCAGAUU_UUUGUGACCAUAUCCGGUUGCCAGUCA__A____________
...............(((((.......))))).........(((.((.......((((((..(((((...........)))))..))))))......)).)))................. ( -6.82 =  -7.96 +   1.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:26:42 2006