| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 17,419,081 – 17,419,173 |
| Length | 92 |
| Max. P | 0.785662 |
| Location | 17,419,081 – 17,419,173 |
|---|---|
| Length | 92 |
| Sequences | 4 |
| Columns | 93 |
| Reading direction | reverse |
| Mean pairwise identity | 89.59 |
| Mean single sequence MFE | -24.23 |
| Consensus MFE | -18.77 |
| Energy contribution | -19.52 |
| Covariance contribution | 0.75 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.89 |
| Structure conservation index | 0.78 |
| SVM decision value | 0.57 |
| SVM RNA-class probability | 0.785662 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 17419081 92 - 22224390 AAC-UCGGUCGGAAAAUUAAGAAGUGCAGAGACAUUUAUCAAAGAAAAGUCGCUGGAGCGACAAUUACUCGUUCCGCUUGUGACUGCAUUUUA ...-................(((((((((.(((.(((.......))).)))((.(((((((.......)))))))))......))))))))). ( -24.70) >DroSec_CAF1 12628 92 - 1 AAC-UCGGUCGGAAAAUUAAGAAGUGCAGAGAUAUUUAUCUAAGAAAAGUCGCUGGAGCGACAAUUACUCGUUCCGCUUGUGACUGCAUUUUA ...-................(((((((..((((....))))......((((((((((((((.......))))))))...))))))))))))). ( -25.10) >DroEre_CAF1 12652 93 - 1 AAACUCGGUCGCAAAAAUAAGAAGUGCAUAGACAUUUAUCCAAGAAAAGUCGCUGGAGCGACAAUUACUCGUUCCGCUUGUGACUGCAUUUUA .....(((((((((................(((.(((.......))).)))((.(((((((.......))))))))))))))))))....... ( -24.60) >DroYak_CAF1 12672 93 - 1 AACUUGGGCGGCAAAAAUAAGAAGUACAGCGAUAUUUAUCAAAGAAAAGUCGCUAGAGCGACACUUGUUCGUUCCGCUUGUGACCGCAUUUUA .......((((.....(((((......((((((.(((.......))).)))))).(((((((....).))))))..)))))..))))...... ( -22.50) >consensus AAC_UCGGUCGCAAAAAUAAGAAGUGCAGAGACAUUUAUCAAAGAAAAGUCGCUGGAGCGACAAUUACUCGUUCCGCUUGUGACUGCAUUUUA ....................(((((((...((......)).......((((((((((((((.......))))))))...))))))))))))). (-18.77 = -19.52 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:26:39 2006