Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 17,417,822 – 17,417,922 |
Length | 100 |
Max. P | 0.723163 |
Location | 17,417,822 – 17,417,922 |
---|---|
Length | 100 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 85.56 |
Mean single sequence MFE | -25.16 |
Consensus MFE | -17.52 |
Energy contribution | -18.52 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.98 |
Structure conservation index | 0.70 |
SVM decision value | 0.40 |
SVM RNA-class probability | 0.723163 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 17417822 100 - 22224390 GGAUCGUGGCUGUUAAAUAAAUUAAAGCGCGAUUUGCAUAAAUUUGUAAUCGAAUCG---------------AGGUGACAAAGCGUGUAAUUUAUGCCGCACAAUCA-----AUAGCAGA .....(((((......((((((((..((((((((.(((......)))))))......---------------.(....)...)))).))))))))))))).......-----........ ( -23.20) >DroSec_CAF1 11420 100 - 1 GGAUCGUGGCUGUUAAAUAAAUUAAAGCGCGAUUUGCAUAAAUUUGUAAUCGAAUCG---------------AGGUGACAAAGCGUGUAAUUUAUGCCGCACAAUCA-----AUAGCAGA .....(((((......((((((((..((((((((.(((......)))))))......---------------.(....)...)))).))))))))))))).......-----........ ( -23.20) >DroEre_CAF1 11373 100 - 1 GGAUCGUGGCUGUUAAAUAAAUUAAGUCGCGAUUUGCAUAAAUUUGUAAUCGAAUCG---------------AGGUGACAAAGCGUGUAAUUUAUGCCGAAAAAUCG-----AUAACAGA (((((((((((.............))))))))))).......(((((.(((((.(((---------------.(....)...(((((.....))))))))....)))-----)).))))) ( -27.42) >DroYak_CAF1 11373 100 - 1 GGAUCGUGGCUGUUAAAUAAAUUAAAGCGCGAUUUGCAUAAAUUUGUAAUCGAAUCG---------------AGGUGACAAAGCGUGUAAUUUAUGCCGCAAAAUCA-----AUAACAGA .....(((((......((((((((..((((((((.(((......)))))))......---------------.(....)...)))).))))))))))))).......-----........ ( -23.20) >DroAna_CAF1 11330 120 - 1 CGAUCCAAUCGGUUAAAUAAAUUAAAGCGCGAUUUGCAUAAAUUUGUAAUCGAAUCGAAUCGGAUCGAGUUGAGGUGACAAAGCGUGUAAUUUAUGCCACAUUUCCACUCUCAUAUCUGA .(((((..((((((..(((((((...(((.....)))...))))))).....))))))...)))))((((.((((((.....(((((.....)))))..)))))).)))).......... ( -28.80) >consensus GGAUCGUGGCUGUUAAAUAAAUUAAAGCGCGAUUUGCAUAAAUUUGUAAUCGAAUCG_______________AGGUGACAAAGCGUGUAAUUUAUGCCGCAAAAUCA_____AUAACAGA .....(((((......((((((((...(((((((.(((......)))))))......................(....)...)))..))))))))))))).................... (-17.52 = -18.52 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:26:38 2006