Locus 6953

Sequence ID X_DroMel_CAF1
Location 17,417,044 – 17,417,134
Length 90
Max. P 0.972964
window11361

overview

Window 1

Location 17,417,044 – 17,417,134
Length 90
Sequences 4
Columns 90
Reading direction forward
Mean pairwise identity 97.78
Mean single sequence MFE -27.78
Consensus MFE -26.85
Energy contribution -27.10
Covariance contribution 0.25
Combinations/Pair 1.00
Mean z-score -2.91
Structure conservation index 0.97
SVM decision value 1.70
SVM RNA-class probability 0.972964
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17417044 90 + 22224390
UUCAACGGAUUGCAAAUGCAGCCACAAUGGUUGAUAGUUUAGUCCAUUGAACGCACAAUGGGCUGAAUGGAGCAUGAACAAAUGUUUAGC
.(((((((.((((....))))))......)))))..(((((((((((((......))))))))))))).((((((......))))))... ( -28.40)
>DroSec_CAF1 10625 90 + 1
UUCAACGGAUUGCAAAUGCAGCCACAAUGGUUGAUAGUUUAGUCCAUUGAACGCACAAUGGGCUGAAUGGGGCAUGAACAAAUGUUUAGC
.(((((((.((((....))))))......)))))..(((((((((((((......))))))))))))).((((((......))))))... ( -27.50)
>DroEre_CAF1 10619 90 + 1
UUCAACGGAUUGCAAAUGCAGCCACAAUGGUUGAUAGUUUAGUCCAUUGAACGCACAAUGGGCUGAAUGGAGCACGAACAAAUGUUUAGU
..........(((.....(((((.....)))))...(((((((((((((......)))))))))))))...))).((((....))))... ( -26.50)
>DroYak_CAF1 10592 90 + 1
UUCAACGCAUUGCAAAUGCAGCCACAAUGGUUGAUAGUUUAGUCCAUUGAACGCACAAUGGGCUGAAUGGAGCAUGAACAAAUGUUUAGC
......((..(((.....(((((.....)))))...(((((((((((((......)))))))))))))...)))(((((....))))))) ( -28.70)
>consensus
UUCAACGGAUUGCAAAUGCAGCCACAAUGGUUGAUAGUUUAGUCCAUUGAACGCACAAUGGGCUGAAUGGAGCAUGAACAAAUGUUUAGC
..........(((.....(((((.....)))))...(((((((((((((......)))))))))))))...)))(((((....))))).. (-26.85 = -27.10 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:26:37 2006