Locus 6952

Sequence ID X_DroMel_CAF1
Location 17,416,578 – 17,416,685
Length 107
Max. P 0.586909
window11360

overview

Window 0

Location 17,416,578 – 17,416,685
Length 107
Sequences 5
Columns 107
Reading direction forward
Mean pairwise identity 85.11
Mean single sequence MFE -23.08
Consensus MFE -16.70
Energy contribution -17.88
Covariance contribution 1.18
Combinations/Pair 1.10
Mean z-score -1.66
Structure conservation index 0.72
SVM decision value 0.11
SVM RNA-class probability 0.586909
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17416578 107 + 22224390
UAAUUGACCAGAAACAAUGAUCGGAAACAUGAUUAAACAUUGAGUGAUCAAUGGGGCAAGUACACACAUAUGUACAUAAGUUGCCGGCGGCGAGGAUGGAAGCUUCA
...(((.((........((((((....)..)))))..((((((....)))))).((((((((((......))))).....)))))))))).((((.......)))). ( -24.80)
>DroSec_CAF1 10221 83 + 1
UAGUUGACCAGAAACAAUGAUCGGAAACAUGAUCAAACAUUGAGUGAUCAAUGGGGCAC------------GUACAUAAGUUGCCGGCGGCGACG------------
..((((.((........((((((....)..)))))..((((((....)))))).(((((------------........).))))...)))))).------------ ( -25.20)
>DroSim_CAF1 10302 95 + 1
UAAUUGACCAGAAACAAUGAUCGGAAACAUGAUUAAACAUUGAGUGAUCAAUGGGGCAC------------GUACAUAAGUUGCCGGCGGCGAGGAUGGAAGCUUCA
...(((.((........((((((....)..)))))..((((((....)))))).(((((------------........).))))))))).((((.......)))). ( -20.90)
>DroEre_CAF1 10207 91 + 1
UAAUUGACCAGAAACAAUAAUCGGAAACAUGAUUAAACAUUGAGUGAUCAAUGGGGCAA------------GU----AAAUUGCCGGCGGCGAGGAUGGAAGCUUCA
...(((.((........((((((....)..)))))..((((((....)))))).(((((------------..----...)))))))))).((((.......)))). ( -22.20)
>DroYak_CAF1 10127 91 + 1
UAAUUGACCAGAAACAAUGAUCGGAAACAUGAUUAAACAUUGAGUGAUCAAUGGGGCAA------------GU----AAAUUGCCGGCGGCGAGGAUGGAAGCUUCA
...(((.((........((((((....)..)))))..((((((....)))))).(((((------------..----...)))))))))).((((.......)))). ( -22.30)
>consensus
UAAUUGACCAGAAACAAUGAUCGGAAACAUGAUUAAACAUUGAGUGAUCAAUGGGGCAA____________GUACAUAAGUUGCCGGCGGCGAGGAUGGAAGCUUCA
....((.((........((((((....)..)))))..((((((....)))))).))))......................(((((...))))).............. (-16.70 = -17.88 +   1.18)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:26:36 2006