Locus 6951

Sequence ID X_DroMel_CAF1
Location 17,416,407 – 17,416,546
Length 139
Max. P 0.989992
window11358 window11359

overview

Window 8

Location 17,416,407 – 17,416,513
Length 106
Sequences 3
Columns 109
Reading direction reverse
Mean pairwise identity 81.25
Mean single sequence MFE -30.17
Consensus MFE -23.67
Energy contribution -23.34
Covariance contribution -0.33
Combinations/Pair 1.14
Mean z-score -2.76
Structure conservation index 0.78
SVM decision value 2.19
SVM RNA-class probability 0.989992
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17416407 106 - 22224390
GUGUUUAACUAUUGGGCUACCAAUCGCAAUUUGUCAGGGCCCAGAAUCCAAGGGCCAA--GGC-GGGGGAAACCCAAUUCGAUGACUUCAAUUAUUGGAUGUAUGUAAC
(((.......(((((....))))))))....((((..(((((.........)))))..--)))-)(((....))).(((((((((......)))))))))......... ( -32.01)
>DroEre_CAF1 10029 103 - 1
GUAUUCCACUAUUGGGUUACCAAUCGCAAUUUGUCAAGGCCCAGAAUAAAAGGGCUAAAA--CAGGGGGAAACCCAAUGCGAUAACUUCAAUUAUUAA----AUGUAAC
(((..(((....)))..)))..((((((..((((...(((((.........)))))...)--)))(((....)))..))))))...............----....... ( -29.40)
>DroYak_CAF1 9966 96 - 1
GUGUUCAACUAUUGGGUUACCAAUCACAAUUUGUCAGGGCCCAGAAUCAAAGGGCUCAAA--C-GGGGGAAACCCAAUUCGAUGACAUCAAUUAUU----------GAC
....((((..(((((....))))).......(((((((((((.........))))))...--.-.(((....))).......))))).......))----------)). ( -29.10)
>consensus
GUGUUCAACUAUUGGGUUACCAAUCGCAAUUUGUCAGGGCCCAGAAUCAAAGGGCUAAAA__C_GGGGGAAACCCAAUUCGAUGACUUCAAUUAUU______AUGUAAC
(((.......(((((....))))))))...(((((..(((((.........))))).........(((....))).....)))))........................ (-23.67 = -23.34 +  -0.33)

alignment

Postscript

secondary structure

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dotplot

Postscript

Window 9

Location 17,416,438 – 17,416,546
Length 108
Sequences 3
Columns 118
Reading direction reverse
Mean pairwise identity 84.30
Mean single sequence MFE -33.14
Consensus MFE -29.03
Energy contribution -28.49
Covariance contribution -0.55
Combinations/Pair 1.15
Mean z-score -3.09
Structure conservation index 0.88
SVM decision value 2.16
SVM RNA-class probability 0.989245
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17416438 108 - 22224390
-------UCUGACAUUGGCCUAAAUUCAAAUAUGAUUUUUGUGUUUAACUAUUGGGCUACCAAUCGCAAUUUGUCAGGGCCCAGAAUCCAAGGGCCAA--GGC-GGGGGAAACCCAAU
-------.((((((...((.(((((.((((.......)))).)))))...(((((....))))).))....))))))(((((.........)))))..--...-.(((....)))... ( -35.70)
>DroEre_CAF1 10056 116 - 1
UCCCUGAUCUGACAUUGGCCUAAAUUCAAAUACGAUUUUUGUAUUCCACUAUUGGGUUACCAAUCGCAAUUUGUCAAGGCCCAGAAUAAAAGGGCUAAAA--CAGGGGGAAACCCAAU
.((((..((((.....(((((.....(((((.(((((...(((..(((....)))..))).)))))..)))))...))))))))).....))))......--...(((....)))... ( -33.60)
>DroYak_CAF1 9987 105 - 1
-------UCUGACAUUGGCCUAAAUUCAAAUAC---UUCUGUGUUCAACUAUUGGGUUACCAAUCACAAUUUGUCAGGGCCCAGAAUCAAAGGGCUCAAA--C-GGGGGAAACCCAAU
-------..(((((.((((((((.....(((((---....)))))......))))))))............)))))((((((.........))))))...--.-.(((....)))... ( -30.12)
>consensus
_______UCUGACAUUGGCCUAAAUUCAAAUACGAUUUUUGUGUUCAACUAUUGGGUUACCAAUCGCAAUUUGUCAGGGCCCAGAAUCAAAGGGCUAAAA__C_GGGGGAAACCCAAU
........((((((.((((((((.....(((((.......)))))......))))))))............))))))(((((.........))))).........(((....)))... (-29.03 = -28.49 +  -0.55)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:26:35 2006