Locus 6947

Sequence ID X_DroMel_CAF1
Location 17,400,435 – 17,400,555
Length 120
Max. P 0.753652
window11351

overview

Window 1

Location 17,400,435 – 17,400,555
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 82.78
Mean single sequence MFE -29.01
Consensus MFE -19.49
Energy contribution -20.83
Covariance contribution 1.34
Combinations/Pair 1.13
Mean z-score -2.11
Structure conservation index 0.67
SVM decision value 0.48
SVM RNA-class probability 0.753652
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17400435 120 + 22224390
GCUCUCGCAACAGCUGGUGCGCAAUAAUAUUCAUUGAUGGUUAAGUAUUUGUUGGUAGCUUACAUUGAGUACAGCUGUGCUUGAAAUAAUUGUAUUAAAUUAUUCAAUUAUUAUUUGAAA
..((..(((.((((((.(((.((((.......((..(..(........)..)..)).......)))).))))))))))))..))((((((((.((......)).))))))))........ ( -26.34)
>DroSec_CAF1 115468 120 + 1
GCUCUCGCAAGAGCUGGUGCGCAUUAAUAUUCAUUGAUGGUUAAGUAUUUGUUGGUAGCUUACUUUGGGUACAGCUGUGCCUGAAAUAAUUGUAUUACAUUAUUCAAUUAUUAUUUAAGA
(((((.(((((.(((...((.(((((((....)))))))))..))).))))).)).))).....(..(((((....)))))..)((((((((.((......)).))))))))........ ( -30.40)
>DroYak_CAF1 108861 109 + 1
GCAUUCGCAACAGCUGGUGCACAUGAAUAUUCAUUGAUGGCUAGGUAUUUGUUGGUCAAUUAUUUUGAGUACAGCUGUGCUUAAAAUAAUUGUAUUACGUCAUUCAAUU-----------
((((..((....))..))))..((((....))))((((((((((.......)))))((((((((((((((((....)))))))))))))))).....))))).......----------- ( -30.30)
>consensus
GCUCUCGCAACAGCUGGUGCGCAUUAAUAUUCAUUGAUGGUUAAGUAUUUGUUGGUAGCUUACUUUGAGUACAGCUGUGCUUGAAAUAAUUGUAUUACAUUAUUCAAUUAUUAUUU_A_A
(((((.((((..(((...((.(((((((....)))))))))..)))..)))).)).))).....((((((((....))))))))((((((((.((......)).))))))))........ (-19.49 = -20.83 +   1.34)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:26:29 2006