Locus 6946

Sequence ID X_DroMel_CAF1
Location 17,400,136 – 17,400,230
Length 94
Max. P 0.835054
window11350

overview

Window 0

Location 17,400,136 – 17,400,230
Length 94
Sequences 3
Columns 109
Reading direction reverse
Mean pairwise identity 80.38
Mean single sequence MFE -42.70
Consensus MFE -29.14
Energy contribution -29.03
Covariance contribution -0.11
Combinations/Pair 1.08
Mean z-score -1.96
Structure conservation index 0.68
SVM decision value 0.73
SVM RNA-class probability 0.835054
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17400136 94 - 22224390
UUGACAAAGCG--AUGGGUUGGG-----G--------GAGCAGGUAGAUGGCCGGGUGGGCGGUGGUAAACUAACCGCCGACCCGUCCGCAAAACUCCCAUCUUUAGAU
..........(--((((((((.(-----(--------(....(((.....)))((((.((((((((....)).)))))).)))).))).)))....))))))....... ( -39.70)
>DroSec_CAF1 115163 100 - 1
UUGACAAAGCGGGGUGGGCUGGG-----G-UGUG---CGGCAGGUGGGUGGCCGGGUGGGCGGUGGCAAACUAACCGCCGACCCGUCCACAAAACUCCCAUCUUUAGAU
..........(((((((((((..-----.-....---)))).(((..((((.(((((.((((((.........)))))).))))).))))...))).)))))))..... ( -44.30)
>DroYak_CAF1 108572 102 - 1
UUGACAAAGCG--GUGGCGUGGGCAGUGGGCGUGGCUGGGCAGGU-----GCUGGGUGGGCGGUGGCAAGCUAACCGCCGACCCGUCCGCAAAACUCCCAUCUUUAGAU
........((.--...))(((((.(((..(((.(((..(((....-----)))((((.((((((((....)).)))))).))))))))))...))))))))........ ( -44.10)
>consensus
UUGACAAAGCG__GUGGGCUGGG_____G__GUG___GGGCAGGU_G_UGGCCGGGUGGGCGGUGGCAAACUAACCGCCGACCCGUCCGCAAAACUCCCAUCUUUAGAU
.....((((....(((((..((....................(((.....)))((..(((((((((........)))))).)))..))......))))))))))).... (-29.14 = -29.03 +  -0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:26:27 2006