Locus 6944

Sequence ID X_DroMel_CAF1
Location 17,393,487 – 17,393,598
Length 111
Max. P 0.664048
window11347

overview

Window 7

Location 17,393,487 – 17,393,598
Length 111
Sequences 5
Columns 111
Reading direction forward
Mean pairwise identity 85.26
Mean single sequence MFE -25.56
Consensus MFE -17.50
Energy contribution -17.42
Covariance contribution -0.08
Combinations/Pair 1.20
Mean z-score -1.91
Structure conservation index 0.68
SVM decision value 0.28
SVM RNA-class probability 0.664048
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17393487 111 + 22224390
GAAAUGUAACAGGAAGAGUCAACCAAAGGGGCACUUUUUUCUUCAUUCAGUUUGAUGAUUGGCCACACUUCUGAAAUUCCUGAAUUCAUUUUUUAACAGCACCCUGCUGAA
((((((...((((((...(((....(((.(((.......((.(((.......))).))...)))...))).)))..))))))....))))))....((((.....)))).. ( -25.20)
>DroSec_CAF1 108555 108 + 1
AAAAUGAAAUAGGAAGAGCCAACCAAAGGGGCACUUUUUUCUUCAUUCAGUCUG---AUUGGUGUCACUUCUGAAAUUCCUGAACUCAUUUUUUAACAGCACCCUGCUGAA
(((((((..((((((..(((.........))).............(((((..((---((....))))...))))).))))))...)))))))....((((.....)))).. ( -25.80)
>DroSim_CAF1 82384 108 + 1
AAAAUGAAAUAGGAAGUGUCAACCAAAGGGGCACUUUUUUCUUCAUUCAGUCUG---AUUGGUGUCACUUCUGAAAUUCCUGAACUCAUUUUUUAACAGCACCCUGCUGAA
(((((((..(((((((((((.........)))))...........(((((..((---((....))))...))))).))))))...)))))))....((((.....)))).. ( -26.90)
>DroEre_CAF1 110014 108 + 1
GAAAUGAAAUAGGAAGUGUCAAGCAAACGGACACUUUUUUCUUCAUUCAAUUCG---AUUCCUGACACUUUUCAGAUUCCAGAACUCGUUUUUUAACAGCACCCCGCUGAA
(((.((((..((((((((((.........))))))))))..)))))))((..((---((((((((......))))......))).)))..))....((((.....)))).. ( -23.50)
>DroYak_CAF1 102103 108 + 1
UAGGUGAAAUAGGAAGUGUGAACCAAACGGACACUUUUUUCUUCACUCAAUUUG---AUUGGUGACACUUCAGAGAUUCCAGCACCUUUUUUUUAACAGCACCCCGCUGAA
..((((((..(((((((((...((....)))))))))))..))))))...((((---(.((....))..)))))......................((((.....)))).. ( -26.40)
>consensus
AAAAUGAAAUAGGAAGUGUCAACCAAAGGGGCACUUUUUUCUUCAUUCAGUUUG___AUUGGUGACACUUCUGAAAUUCCUGAACUCAUUUUUUAACAGCACCCUGCUGAA
..((((((..((((((((((.........))))))))))..)))))).................................................((((.....)))).. (-17.50 = -17.42 +  -0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:26:25 2006