Locus 6943

Sequence ID X_DroMel_CAF1
Location 17,392,252 – 17,392,350
Length 98
Max. P 0.533585
window11346

overview

Window 6

Location 17,392,252 – 17,392,350
Length 98
Sequences 5
Columns 107
Reading direction forward
Mean pairwise identity 71.07
Mean single sequence MFE -18.38
Consensus MFE -3.18
Energy contribution -4.26
Covariance contribution 1.08
Combinations/Pair 1.14
Mean z-score -1.62
Structure conservation index 0.17
SVM decision value 0.00
SVM RNA-class probability 0.533585
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17392252 98 + 22224390
AAACAUUUUGAUGCAUUAAAAAG-CU--U--UCAUGUACUUUUUAUGAUGCUUAUA--UAACUUAUAAGCUCUACCAAAUGAGUCAG-AUCCAUUAUAAAA-AGGGG
..(((...(((.((........)-).--.--)))))).((((((((((((((((((--.....)))))))((((((....).)).))-)...)))))))))-))... ( -18.50)
>DroSec_CAF1 107258 96 + 1
AACAAUUUGGAUGCAUAAAAAAG-CU--U--UCAUGUACCUUUUAUGGUGCAUAUA--UAACUUAAAAGCUCUACAAGAUGCGUCAG-AUCCAUG--AAAA-AGGGU
.........(((((((.....((-((--(--(.(((((((......))))))).((--.....)))))))).......)))))))..-((((.(.--...)-.)))) ( -23.20)
>DroSim_CAF1 81088 96 + 1
AACAAUUUGGAUGCAUAAAAAAG-CU--U--UCAUGUACCUUUUAUGGUGCAUAUA--UAACUUAUAAGCUCUACAAGAUGCGUCAG-AUCCAUG--AAAA-AGGGU
.........(((((((.....((-((--(--..(((((((......)))))))(((--.....)))))))).......)))))))..-((((.(.--...)-.)))) ( -23.10)
>DroEre_CAF1 108754 93 + 1
-----GUUGGACGCAUAAAAAAG-GU--U--GCAUGUACCUCCUAUUUUGCUUAUAAGUAAUAUAUAAGCUCGACAAAAUGAGUCAA-AUCAAUU--AAAG-AUGGA
-----...(((((((........-..--)--))..)).))..((((((((((((((.......)))))))..(((.......)))..-.......--.)))-)))). ( -14.80)
>DroYak_CAF1 100886 92 + 1
-----AUAUUAUGUGCAAUAAACUGUAAUGAAAAUCUACCU-UUAUGGUGCAUAUA--UAACUUAUAAGCCUC-----AUGACUCAUGACCAAUA--AAAAAAAGGC
-----....(((((((((((((..(((((....)).))).)-))))..))))))))--..........(((((-----(((...)))))......--.......))) ( -12.31)
>consensus
AA__AUUUGGAUGCAUAAAAAAG_CU__U__UCAUGUACCUUUUAUGGUGCAUAUA__UAACUUAUAAGCUCUACAAAAUGAGUCAG_AUCCAUG__AAAA_AGGGU
.................................(((((((......)))))))...................................................... ( -3.18 =  -4.26 +   1.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:26:24 2006