Locus 6942

Sequence ID X_DroMel_CAF1
Location 17,387,156 – 17,387,254
Length 98
Max. P 0.680849
window11345

overview

Window 5

Location 17,387,156 – 17,387,254
Length 98
Sequences 4
Columns 98
Reading direction forward
Mean pairwise identity 81.44
Mean single sequence MFE -10.77
Consensus MFE -10.52
Energy contribution -10.53
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -0.85
Structure conservation index 0.98
SVM decision value 0.31
SVM RNA-class probability 0.680849
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17387156 98 + 22224390
CGAACUGCAAUUUAAACUCUAGGGAGUGCUGUUGUUUUUCAUUUUAUCUAUACAUACACUUAUUUAGUUUUUGUUUUUUUUUUUUUGUUUGCUAUUUU
.(((..(((((....((((....))))...)))))..)))...........(((...(((.....)))...)))........................ ( -12.10)
>DroSim_CAF1 76268 87 + 1
CGAACUGCAAUUUAAACUCUAGGGAGUGCUGUUGUUUUUCCUUUUAUCUAUACAUACACUUAUUUAGUU-----------UUUUUUUUUUGUUAUUUU
.(((..(((((....((((....))))...)))))..))).............................-----------.................. ( -10.30)
>DroEre_CAF1 104381 89 + 1
CGAACUGCAAUUUAAACUCUAGGGAGUGCUGUUGUUUUUCCUUUUAUCUAUACAUAUAUUUAUUUAGUUGG---UUUUUUUUUUU------UGUGUUU
.(((..(((((....((((....))))...)))))..)))...........(((((...............---...........------))))).. ( -10.37)
>DroYak_CAF1 96399 82 + 1
CGAACUGCAAUUUAAACUCUAGGGAGUGCUGUUGUUUUUCCUUUUAUCUAUACAUAUAUUUAUUUAGUUUU---UUUU-------------CCUUUUU
.(((..(((((....((((....))))...)))))..)))...............................---....-------------....... ( -10.30)
>consensus
CGAACUGCAAUUUAAACUCUAGGGAGUGCUGUUGUUUUUCCUUUUAUCUAUACAUACACUUAUUUAGUUUU___UUUU__UUUUU______CUAUUUU
.(((..(((((....((((....))))...)))))..))).......................................................... (-10.52 = -10.53 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:26:23 2006