Locus 6941

Sequence ID	X_DroMel_CAF1
Location	17,385,227 – 17,385,337
Length	110
Max. P	0.912672

overview

Window 4

Location	17,385,227 – 17,385,337
Length	110
Sequences	6
Columns	120
Reading direction	forward
Mean pairwise identity	79.08
Mean single sequence MFE	-37.32
Consensus MFE	-20.76
Energy contribution	-20.34
Covariance contribution	-0.41
Combinations/Pair	1.23
Mean z-score	-2.40
Structure conservation index	0.56
SVM decision value	1.08
SVM RNA-class probability	0.912672
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17385227 110 + 22224390
CCGCUUCAAUUAGAAAUUCAUGAUUCGUGGCGAUUUCUUUAUGCCCGUAACGGGC--UGAUGAGGCAACUCUGCUGUU-UAUUUUCA---CUGCAUUAGGG----UUGCCAGGUAGCCGG
.((..(((...(....)...)))..))((((....((.(((.(((((...)))))--))).))((((((((((.(((.-........---..))).)))))----))))).....)))). ( -34.40)
>DroPse_CAF1 123203 110 + 1
CGGUUUCAAUUAGAAAUUCAUGAUUCCG--UGCU---CCCGUGCCCGUAACGGGCUUUGAUGAGGCAGCUCUGCUGCUUCAUUUUCCGCGGGGCAUUAGAGCCUUUUGCCCA-----CAG
(((..(((...(....)...)))..)))--(((.---((((((((((...)))))...(((((((((((...)))))))))))....))))))))...(.((.....)).).-----... ( -41.10)
>DroSec_CAF1 102152 110 + 1
CUGCUUCAAUUAGAAAUUCAUGAUUCGUGGCGAUUUCUUUAUGCCCGUAACGGGC--UGAUGAGGCAACUCUGCUGUU-UAUUUUUA---CUGCAUUAGGG----UUGCCAGGUAGCCGG
((((((((...(((((((((((...))))..)))))))....(((((...)))))--...)))((((((((((.(((.-........---..))).)))))----))))).))))).... ( -34.30)
>DroEre_CAF1 102571 110 + 1
CCGCUUCAAUUAGAAAUUCAUGAUUCGUGGCGAUUUCUUUAUGCCCGUAACGGGC--UGAUGAGGCAACUCUGCUGUU-UAUUUUCU---CUGCAUUAGGG----UUGCCAGGUCGCCGG
.((..(((...(....)...)))..))((((((((((.(((.(((((...)))))--))).))((((((((((.(((.-........---..))).)))))----))))).)))))))). ( -39.10)
>DroAna_CAF1 107898 108 + 1
CUUCUUCAAUUAGAAAUUCAUGAUUCGCGGUGAUUCCUUCAUGCCCGUAACGGGC--UGAUGAGGCAACUCUGCUGUU-UAUUUUCG---CUGCAUUAGAG----UUGCCAGGCUGCC--
.((((......))))...........(((((...((..(((.(((((...)))))--))).))((((((((((.(((.-........---..))).)))))----)))))..))))).-- ( -36.50)
>DroPer_CAF1 120824 110 + 1
CGGUUUCAAUUAGAAAUUCAUGAUUCCG--UGUU---CCCGUGCCCGUAACGGGCUUUGAUGAGGCAGCUCUGCUGCUUUAUUUUCCGCGGGGCAUUAGAGCCUUUUGCCCA-----CAG
.((..(((...(....)...)))..))(--((..---.(((((((((...)))))...(((((((((((...)))))))))))....))))((((..((...))..))))))-----).. ( -38.50)
>consensus
CCGCUUCAAUUAGAAAUUCAUGAUUCGUGGCGAUUUCUUCAUGCCCGUAACGGGC__UGAUGAGGCAACUCUGCUGUU_UAUUUUCA___CUGCAUUAGAG____UUGCCAGGU_GCCGG
.((..(((............)))..)).(((...........(((((...)))))........((((((((((.(((...............))).)))))....))))).....))).. (-20.76 = -20.34 +  -0.41)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:26:22 2006