Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 17,377,211 – 17,377,302 |
Length | 91 |
Max. P | 0.533987 |
Location | 17,377,211 – 17,377,302 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 83.31 |
Mean single sequence MFE | -25.31 |
Consensus MFE | -19.06 |
Energy contribution | -18.70 |
Covariance contribution | -0.36 |
Combinations/Pair | 1.10 |
Mean z-score | -1.50 |
Structure conservation index | 0.75 |
SVM decision value | 0.00 |
SVM RNA-class probability | 0.533987 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 17377211 91 - 22224390 ----------------------------GCCAAGUUGCGGAAGCGAACAUUUAAUUGACUUGGCGUGUUAAGCGCUGCAUACCAGCACAUAACAGCAAUCAACCGACAAACAACUGG-UG ----------------------------((((((((((....)))).((......)).)))))).(((((.(.((((.....)))).).))))).......((((.........)))-). ( -26.10) >DroPse_CAF1 113907 87 - 1 --------------------------------AGUUGCGGAAGCGAACAUUUAAUUGACUUGGCGUGUUAAGCGUUGCAUACCAGCACAUAACAGCAAUCAACCGACAAACAACUUG-UG --------------------------------.(((((....)).)))......((((....((.(((((.(.((((.....)))).).)))))))..))))...((((.....)))-). ( -17.90) >DroGri_CAF1 108674 89 - 1 ------------------------------CAAGUUGCGGAAGC-AACAUUUAAUUGACUUGGCGUGUUAAGCGCUGCAUACCAGCACAUAACAGCAAUCAACCGACAAACAACUUCUUG ------------------------------...(((((....))-)))......((((....((.(((((.(.((((.....)))).).)))))))..)))).................. ( -23.40) >DroEre_CAF1 94609 99 - 1 --------------GCCAAGU------CGCCAAGUUGCGGAAGCGAACAUUUAAUUGACUUGGCGUGUUAAGCGCUGCAUACCAGCACAUAACAGCAAUCAACCGACAAACAACUGG-UG --------------(((((((------((.....((((....)))).........))))))))).(((((.(.((((.....)))).).))))).......((((.........)))-). ( -30.54) >DroAna_CAF1 98194 119 - 1 GUGGAGAGUGGAGAGCCAAGAGUGGAGAGCCGCGUUGCGGAAGCAAACAUUUAAUUGACUUGGCGUGUUAAGCGCUGCAUACCGGCACAUAACAGCAAUCAACCGCCAAACAACUCG-UG ((...(.((((...((((((.((((....)))).((((....))))............)))))).(((((.(.((((.....)))).).)))))........)))))..))......-.. ( -36.00) >DroPer_CAF1 111172 87 - 1 --------------------------------AGUUGCGGAAGCGAACAUUUAAUUGACUUGGCGUGUUAAGCGUUGCAUACCAGCACAUAACAGCAAUCAACCGACAAACAACUUG-UG --------------------------------.(((((....)).)))......((((....((.(((((.(.((((.....)))).).)))))))..))))...((((.....)))-). ( -17.90) >consensus ______________________________CAAGUUGCGGAAGCGAACAUUUAAUUGACUUGGCGUGUUAAGCGCUGCAUACCAGCACAUAACAGCAAUCAACCGACAAACAACUUG_UG .................................(((((....)).)))......((((....((.(((((.(.((((.....)))).).)))))))..)))).................. (-19.06 = -18.70 + -0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:26:19 2006