Locus 6938

Sequence ID X_DroMel_CAF1
Location 17,376,770 – 17,376,864
Length 94
Max. P 0.875709
window11340

overview

Window 0

Location 17,376,770 – 17,376,864
Length 94
Sequences 4
Columns 99
Reading direction forward
Mean pairwise identity 81.79
Mean single sequence MFE -23.05
Consensus MFE -19.74
Energy contribution -19.92
Covariance contribution 0.19
Combinations/Pair 1.11
Mean z-score -1.80
Structure conservation index 0.86
SVM decision value 0.89
SVM RNA-class probability 0.875709
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17376770 94 + 22224390
GCAAAAGUGACAGCGCUAAUGGGCAGCAAAGGCUGUCCUACAGUUGGGAUCCAUCUCAAAAUGCACAGGGCAAAAAAAAAAAACAGAUGACUAC-----
((....(((.((..(((...(((((((....)))))))...)))(((((....)))))...)))))...)).......................----- ( -22.00)
>DroSec_CAF1 93566 93 + 1
GCAAAAGUGACAGCGCUAAUGGGCAGCAAAGGCUGUCCCACAGUUGGGAUCCAUCUCAAAAUGCACUGGGCAAA------AAACAGAUGACUACUCGCA
......((((((((.....((((((((....)))).))))..)))).....(((((.....(((.....)))..------....))))).....)))). ( -25.00)
>DroEre_CAF1 94119 76 + 1
GCAAAAGUGACAGCGCUAAUGGGCAGCAAAGGCUGUCCUACAGUUGGGAUCCAUCUCGAAAUGUACUGGAAGA-------AAA----------------
..........(((..(....(((((((....))))))).....((((((....))))))...)..))).....-------...---------------- ( -20.30)
>DroYak_CAF1 85601 87 + 1
GCAAAAGUGACAGCGCUAAUGGGCAGCAAAGGCUGUCCUACAGUGGGGAUCCAUCUCGAAAUGCACUGGGAAA-------AAACAGCGGACUAA-----
.............((((...(((((((....)))))))..(((((.(..((......))..).))))).....-------....))))......----- ( -24.90)
>consensus
GCAAAAGUGACAGCGCUAAUGGGCAGCAAAGGCUGUCCUACAGUUGGGAUCCAUCUCAAAAUGCACUGGGAAA_______AAACAGAUGACUAC_____
..........(((.((....(((((((....))))))).....((((((....))))))...)).)))............................... (-19.74 = -19.92 +   0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:26:18 2006